genome.fa.s846.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000846.1 Hibiscus syriacus cultivar Beakdansim tig00001630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  988667

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277094--277172	39	2.0	39	95	0	140	34	17	30	17	1.94
278759--278835	32	2.5	30	77	8	82	37	28	22	11	1.89
279640--279720	24	3.4	24	89	3	128	25	17	32	24	1.97
283838--283884	24	2.0	24	91	0	76	25	17	34	23	1.96
287974--288337	89	4.0	90	86	3	484	28	23	26	22	1.99
287974--288343	179	2.1	181	87	3	532	28	22	26	22	1.99
289767--289818	24	2.2	23	80	10	61	80	5	7	5	1.01
298914--299271	89	4.0	89	86	1	493	28	26	24	20	1.99
302090--302128	11	3.5	11	83	10	53	25	25	30	17	1.97
302943--302982	2	20.0	2	94	0	71	47	0	0	52	1.00
308411--308503	42	2.2	41	82	1	114	22	21	23	32	1.98
308316--309168	233	3.7	233	85	0	1080	33	16	17	33	1.92
309305--309336	3	10.3	3	93	6	55	31	0	0	68	0.90
310764--310796	17	1.9	17	93	0	57	45	6	0	48	1.27
311298--311345	22	2.2	22	100	0	96	39	0	27	33	1.57
315899--315945	2	24.0	2	95	4	87	51	0	0	48	1.00
317720--317771	21	2.5	21	96	0	95	42	15	13	28	1.85
318076--318177	42	2.5	41	77	1	114	26	22	19	31	1.98
317521--318378	233	3.7	233	83	4	975	32	16	16	34	1.91
318933--318984	26	2.0	27	88	3	79	76	1	17	3	1.02
318969--319028	31	1.9	31	83	6	77	75	0	15	10	1.05
330300--330657	89	4.0	89	85	1	484	28	26	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333476--333513	11	3.5	11	82	10	51	26	23	31	18	1.97
334329--334355	2	13.5	2	100	0	54	51	0	0	48	1.00
339783--339875	42	2.2	41	82	1	114	22	21	23	32	1.98
339688--340540	233	3.7	233	85	0	1098	33	16	17	33	1.92
342133--342165	17	1.9	17	93	0	57	45	6	0	48	1.27
342712--342761	22	2.3	22	100	0	100	38	0	28	34	1.57
349132--349183	21	2.5	21	96	0	95	42	15	13	28	1.85
348933--349767	233	3.6	232	85	2	1036	32	16	16	34	1.91
349488--349589	42	2.5	41	78	1	123	25	22	20	31	1.98
350344--350397	27	2.0	28	88	3	83	77	1	16	3	1.00
353583--353626	18	2.4	18	96	0	79	40	15	31	11	1.83
355915--355950	16	2.2	16	95	0	63	44	2	5	47	1.41
356117--356230	57	2.0	57	89	0	174	34	12	10	42	1.77
358456--358663	75	2.7	76	88	2	285	24	31	23	20	1.98
364466--364505	21	1.9	21	89	0	62	25	40	25	10	1.86
366446--366496	9	6.2	8	76	19	52	13	0	27	58	1.36
366448--366491	17	2.6	17	85	7	63	13	0	29	56	1.38
367080--367287	75	2.7	76	87	4	278	24	31	23	20	1.98
371511--371552	17	2.5	17	84	3	50	28	19	19	33	1.96
379167--379214	21	2.2	22	88	3	71	25	22	29	22	1.99
379241--379303	12	5.6	12	70	14	62	20	19	17	42	1.89
379241--379303	22	2.9	22	85	0	90	20	19	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380332--380366	18	1.9	18	94	0	61	14	20	34	31	1.92
408558--408601	21	2.1	21	91	0	70	45	0	11	43	1.40
408993--409051	22	2.6	22	83	2	73	52	23	1	22	1.56
414354--414419	33	2.1	33	88	5	100	42	7	7	42	1.61
415366--415415	24	2.0	25	84	3	66	40	0	4	56	1.18
416196--416226	16	1.9	16	100	0	62	32	19	19	29	1.96
417714--417831	60	2.0	60	85	6	159	38	16	14	30	1.89
418496--418550	25	2.3	25	81	6	69	60	5	3	30	1.37
419644--419698	22	2.4	23	84	6	76	14	21	25	38	1.92
424243--424282	8	4.8	8	90	6	53	85	0	7	7	0.76
424270--424311	17	2.5	17	84	3	59	80	0	19	0	0.70
424252--424308	8	6.9	8	77	15	53	82	0	14	3	0.80
425244--425735	138	3.6	138	80	3	555	28	26	16	28	1.97
425991--426066	3	26.0	3	94	5	138	34	0	0	65	0.93
426718--426771	19	2.8	19	72	10	56	74	12	5	7	1.21
427712--427756	2	22.5	2	100	0	90	51	0	0	48	1.00
427856--427902	2	23.5	2	100	0	94	48	0	0	51	1.00
432946--433040	3	31.7	3	90	4	147	62	0	4	33	1.15
433372--433474	40	2.6	40	100	0	206	18	19	9	52	1.72
433414--433923	113	4.5	113	91	1	808	29	19	12	39	1.88
434646--435067	84	5.0	84	97	0	783	34	22	14	29	1.93
436215--436251	10	3.9	10	86	10	51	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436212--436312	28	3.7	27	83	11	127	2	17	0	79	0.86
436213--436315	18	5.7	18	74	20	99	2	17	0	79	0.85
436213--436315	27	3.9	27	82	7	131	2	17	0	79	0.85
443568--443599	15	2.2	15	94	5	57	43	3	6	46	1.44
446941--446985	18	2.4	19	82	10	58	64	2	2	31	1.18
449092--449183	3	30.7	3	97	0	175	65	0	1	33	1.00
449464--449496	14	2.4	14	94	0	57	33	6	30	30	1.82
449711--449735	3	8.3	3	100	0	50	0	0	32	68	0.90
453883--453949	10	6.0	10	71	21	53	58	20	11	8	1.60
453885--453958	23	3.2	23	84	5	96	58	22	10	8	1.58
454287--454315	6	4.8	6	100	0	58	13	17	17	51	1.76
455040--455086	12	3.6	13	80	8	51	57	0	0	42	0.98
455880--455947	30	2.3	31	80	14	74	44	1	1	52	1.19
456743--456782	21	1.9	21	85	10	55	47	15	2	35	1.58
456753--456792	21	1.9	21	84	0	53	45	15	2	37	1.59
456822--456897	20	3.7	20	83	15	93	40	9	2	47	1.49
456820--456873	22	2.5	22	96	0	99	40	7	1	50	1.41
456816--456897	22	3.9	22	75	16	84	41	8	2	47	1.47
456909--457039	2	67.5	2	67	19	64	45	4	5	44	1.47
461505--461542	2	19.0	2	100	0	76	50	0	0	50	1.00
468998--469047	21	2.4	21	96	0	91	26	4	24	46	1.70
476191--476238	14	3.4	14	88	8	62	0	16	4	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477819--477985	90	1.9	89	94	1	298	43	6	10	38	1.66
481726--481780	25	2.2	26	90	3	85	65	1	3	29	1.20
481735--481785	12	4.1	12	83	16	68	64	1	1	31	1.15
481735--481790	20	2.9	20	76	15	64	62	3	1	32	1.23
481740--481807	25	2.7	26	86	4	86	58	5	0	35	1.22
481797--481995	35	5.6	37	72	16	170	44	6	2	47	1.40
481839--481910	28	2.6	28	88	4	101	40	5	1	52	1.33
481804--481958	65	2.4	63	87	6	206	43	7	1	47	1.41
481856--481975	65	1.9	64	82	6	154	45	8	2	44	1.47
487964--487996	17	2.0	17	88	5	50	30	18	9	42	1.81
488519--488591	24	3.1	24	78	11	71	36	19	19	24	1.94
496382--496495	24	4.8	24	76	2	95	55	14	10	20	1.68
496837--496924	27	3.3	27	88	0	122	36	19	13	30	1.90
498815--498862	24	2.0	25	83	4	62	31	16	27	25	1.97
500973--501065	12	7.8	12	70	9	55	50	19	10	19	1.76
500971--501079	24	4.5	24	82	0	128	51	17	9	22	1.73
500969--501062	48	2.0	48	89	0	143	51	18	10	20	1.75
501436--501523	27	3.3	27	85	6	133	37	20	10	31	1.86
508864--508959	6	16.5	6	98	1	171	31	52	16	0	1.45
509453--509508	5	10.6	5	98	1	85	0	19	55	25	1.43
509610--509960	20	17.2	19	78	16	250	16	19	25	38	1.92
509621--509961	62	5.6	61	81	9	333	16	19	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509621--509959	82	4.2	80	84	9	393	16	19	25	37	1.93
509621--509878	102	2.5	102	92	3	412	17	19	26	37	1.93
513785--513825	20	2.0	20	85	0	55	34	21	7	36	1.82
515201--515251	24	2.1	24	85	7	68	15	21	31	31	1.95
516274--516320	20	2.5	18	83	10	58	63	4	21	10	1.43
524151--524189	21	1.9	21	89	5	62	38	17	17	25	1.92
525609--525640	2	16.0	2	100	0	64	50	0	0	50	1.00
534173--534217	23	2.0	23	82	8	56	40	4	2	53	1.33
545064--545144	40	2.0	40	92	0	135	32	24	4	38	1.77
545162--545203	17	2.4	18	88	8	68	64	11	0	23	1.27

Tables:   1   2   3   4   5