genome.fa.s846.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000846.1 Hibiscus syriacus cultivar Beakdansim tig00001630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  988667

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548119--548178	25	2.4	25	82	0	75	45	15	11	28	1.81
548182--548244	28	2.2	28	88	0	90	33	3	22	41	1.70
548258--548376	29	4.2	28	74	16	111	40	9	1	48	1.45
548252--548361	57	1.9	57	82	10	136	41	8	2	47	1.47
548896--548983	25	3.5	26	70	16	76	42	17	12	28	1.85
548896--549135	51	4.8	49	82	9	261	40	17	12	29	1.87
548946--549034	25	3.5	24	69	21	65	41	17	13	26	1.87
548899--549085	102	1.8	101	88	5	288	39	18	13	28	1.89
552004--552061	31	2.0	30	83	10	75	43	3	18	34	1.68
556359--556390	16	2.0	16	100	0	64	37	6	12	43	1.68
559824--559939	47	2.5	46	78	5	117	20	20	22	36	1.95
561087--561128	18	2.3	18	95	0	75	33	30	26	9	1.88
561934--562038	54	1.9	54	96	0	192	26	14	29	29	1.95
565113--565167	23	2.4	23	78	6	67	18	20	14	47	1.83
565932--566108	86	2.1	86	100	0	354	28	11	23	36	1.90
568525--568572	2	24.0	2	100	0	96	50	0	0	50	1.00
569718--569767	24	2.1	24	100	0	100	22	18	20	40	1.92
570943--571009	21	3.2	21	80	0	89	32	8	23	34	1.86
571460--571877	210	2.0	208	91	1	676	34	16	18	30	1.93
572480--572506	11	2.5	11	100	0	54	0	14	0	85	0.61
573287--573324	18	2.1	18	85	9	51	52	13	18	15	1.74
575561--575600	21	1.9	21	89	0	62	30	10	27	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575901--575937	2	19.0	2	88	5	58	48	2	0	48	1.15
582259--582304	22	2.1	21	92	4	74	34	36	2	26	1.69
583991--584051	24	2.6	23	79	7	68	36	16	16	31	1.91
585829--585870	22	2.0	21	90	4	66	38	35	2	23	1.68
587254--587284	15	2.0	16	93	6	55	6	16	0	77	0.97
587254--587294	15	2.4	17	84	15	50	9	12	0	78	0.98
587333--587376	21	2.2	20	83	4	52	61	9	9	20	1.53
590601--590635	15	2.3	15	95	0	61	31	5	25	37	1.80
592350--592419	23	3.0	24	85	4	106	20	14	21	44	1.86
592332--592420	23	3.8	23	80	2	97	23	15	17	42	1.88
592517--592575	24	2.4	25	77	11	68	18	15	13	52	1.74
593801--593839	6	6.2	6	85	8	51	20	17	0	61	1.34
593801--593839	13	3.1	13	88	3	62	20	17	0	61	1.34
593878--593943	19	3.5	19	87	0	87	39	18	3	39	1.66
600917--600972	5	10.8	5	74	14	51	17	0	3	78	0.89
600913--600975	27	2.4	27	82	15	78	19	0	3	77	0.90
601109--601152	20	2.3	19	81	14	54	13	11	0	75	1.06
601085--601206	9	13.8	9	65	24	55	15	11	0	72	1.17
601133--601206	26	2.8	26	77	6	78	16	10	1	71	1.20
601131--601211	41	2.0	42	82	2	101	16	11	1	71	1.20
601199--601304	12	8.7	12	71	18	60	17	2	2	76	1.03
601203--601304	23	4.5	22	71	22	68	17	2	2	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601205--601302	27	3.6	27	69	21	80	18	3	3	75	1.06
601176--601333	77	2.0	77	80	10	178	17	5	2	74	1.13
601174--601335	14	12.1	13	65	21	50	17	5	2	74	1.13
601349--601375	14	1.9	14	100	0	54	14	7	3	74	1.18
606261--606300	18	2.2	18	86	8	55	15	2	5	77	1.04
606270--606312	11	3.8	11	87	3	59	13	0	6	79	0.93
606338--606390	2	26.5	2	100	0	106	49	0	0	50	1.00
606520--606562	22	1.9	23	85	4	61	13	4	2	79	1.00
606529--606639	9	11.8	9	70	18	50	18	5	3	72	1.18
606591--606678	10	8.5	10	71	23	51	13	11	0	75	1.06
606583--606665	9	9.2	9	71	21	50	14	10	0	74	1.07
606632--606701	21	3.2	21	82	13	72	17	10	1	71	1.20
607839--607877	15	2.6	15	100	0	78	64	7	0	28	1.21
608356--608460	54	1.9	54	100	0	210	23	26	7	41	1.81
608434--608503	32	2.2	32	84	5	88	27	35	0	37	1.57
613158--613182	5	5.0	5	100	0	50	20	0	0	80	0.72
613520--613561	20	2.0	21	86	9	59	50	0	4	45	1.23
616094--616211	54	2.2	54	80	3	130	35	18	17	27	1.94
617475--617507	11	3.0	11	95	0	57	24	36	0	39	1.56
618543--618625	12	6.8	13	77	14	79	54	6	1	38	1.33
618543--618659	37	3.2	36	78	10	114	52	6	1	38	1.38
618539--618625	17	4.8	18	74	16	74	55	5	1	37	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618565--618621	7	7.9	7	74	14	53	54	3	1	40	1.28
622972--623016	19	2.4	19	100	0	90	22	15	35	26	1.94
622862--623005	65	2.2	64	82	6	175	26	19	25	29	1.99
622907--623071	84	2.0	82	80	8	181	24	16	26	32	1.96
624158--624189	14	2.3	14	94	0	55	28	18	40	12	1.87
625206--625246	14	3.1	14	82	10	50	46	2	7	43	1.44
629577--629616	21	1.9	21	89	0	62	30	7	7	55	1.56
631460--631526	29	2.3	29	92	0	116	23	26	25	23	2.00
631584--631742	65	2.5	64	82	7	180	27	18	23	30	1.97
636218--636271	25	2.2	25	96	0	99	33	9	22	35	1.86
637535--637642	24	4.5	24	68	11	69	23	12	15	48	1.80
651601--651652	24	2.2	24	82	6	61	19	17	13	50	1.78
656107--656202	12	7.7	13	81	9	96	59	3	1	36	1.20
656107--656199	7	13.1	7	84	9	93	59	3	1	36	1.21
656107--656197	33	2.8	32	80	13	96	59	3	1	36	1.21
656919--657127	65	3.2	65	76	6	219	27	17	23	31	1.97
659200--659229	13	2.2	14	94	5	53	53	10	10	26	1.66
659651--659732	23	3.6	22	77	8	85	26	23	24	25	2.00
659655--659751	44	2.2	44	85	10	128	28	20	22	27	1.99
665494--665704	65	3.3	65	76	5	214	27	16	22	33	1.96
665960--666184	7	31.0	7	68	22	110	51	5	2	40	1.38
665954--666110	5	31.8	5	69	22	68	52	5	0	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665955--666187	37	6.4	36	69	19	114	51	5	2	40	1.37
665958--666190	12	20.9	11	69	23	118	51	5	2	40	1.37
669221--669280	25	2.3	26	83	8	70	50	1	1	46	1.21
669253--669310	21	2.8	22	80	15	70	51	1	1	44	1.21
669419--669465	19	2.3	21	85	7	62	59	2	0	38	1.09
669489--669549	24	2.6	23	78	21	72	39	4	0	55	1.21
669473--669549	24	3.5	21	78	18	68	41	3	1	53	1.27
672494--673401	215	4.2	216	92	1	1484	31	19	15	33	1.93
673426--673577	37	4.1	37	85	5	191	19	18	22	40	1.92
679790--679845	21	2.5	24	72	21	59	12	21	26	39	1.89
687510--687721	12	17.2	12	71	20	63	56	4	0	39	1.23
687521--687621	36	2.7	37	81	17	120	58	2	0	38	1.13
687551--687720	2	91.5	2	69	25	108	52	4	0	41	1.26
688488--688549	23	2.8	23	73	4	56	54	16	19	9	1.68
695644--695966	30	11.0	29	76	10	230	41	7	1	49	1.39
695651--695803	59	2.6	60	80	9	186	39	8	1	50	1.44
695644--695826	59	3.1	59	80	10	185	39	9	1	49	1.45
695873--695941	25	2.8	24	78	14	70	42	5	0	52	1.25
695873--695941	24	2.8	25	84	8	88	42	5	0	52	1.25
695839--695956	54	2.2	56	83	7	145	44	6	0	47	1.35
695896--695966	31	2.4	30	85	4	99	42	4	0	53	1.20
695987--696157	29	6.0	29	78	10	174	54	0	9	35	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696144--696198	18	3.0	18	75	2	56	45	0	12	41	1.42
700992--701022	2	15.5	2	100	0	62	48	0	0	51	1.00
702319--703083	379	2.0	376	98	1	1413	32	18	10	39	1.84
708125--708167	18	2.4	18	88	7	61	62	16	4	16	1.48
708195--708241	23	2.0	23	84	8	60	55	10	6	27	1.58
709693--709767	20	3.8	20	74	10	73	30	14	9	45	1.77
709733--709771	20	2.0	20	89	0	60	30	20	5	43	1.73
712410--712467	24	2.4	24	100	0	116	29	17	5	48	1.68
723928--723961	17	2.1	16	88	5	50	14	8	0	76	1.01
725762--725938	90	2.0	89	91	3	284	45	7	10	36	1.67

Tables:   1   2   3   4   5