genome.fa.s8465.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008465.1 Hibiscus syriacus cultivar Beakdansim tig00111278_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  924357

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 561 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181518--181563	17	2.7	17	100	0	92	17	23	41	17	1.90
181557--181627	19	3.7	19	92	1	106	26	29	25	18	1.98
181559--181627	9	7.1	10	76	12	72	27	30	23	18	1.98
188788--188827	12	3.2	12	92	3	62	17	27	37	17	1.92
188807--188852	17	2.7	17	96	0	83	15	23	43	17	1.87
188846--188916	19	3.7	19	92	1	106	26	29	25	18	1.98
188848--188916	9	7.1	10	76	12	72	27	30	23	18	1.98
190989--191127	75	1.9	75	84	3	190	38	9	7	43	1.66
195835--196008	60	2.9	60	82	5	176	32	22	4	39	1.75
196178--196309	60	2.2	61	85	8	173	40	3	21	34	1.71
196523--196575	15	3.6	15	84	2	72	49	1	5	43	1.37
199206--199274	26	2.6	26	97	2	129	44	15	17	21	1.86
199926--199988	27	2.3	27	88	0	90	34	14	19	31	1.91
203500--203531	9	3.4	9	91	8	55	0	9	18	71	1.12
203500--203539	10	4.2	10	93	6	66	0	7	20	72	1.08
205029--205063	18	2.1	17	89	10	54	34	0	0	65	0.93
212169--212216	11	4.3	11	81	2	51	4	4	10	81	0.97
213811--213842	2	16.0	2	100	0	64	50	0	0	50	1.00
218180--218228	20	2.5	20	100	0	98	24	53	0	22	1.47
219499--219552	21	2.7	20	88	5	81	70	0	16	12	1.17
225443--225475	10	3.3	10	91	0	57	9	57	0	33	1.30
230972--231040	28	2.4	29	85	9	97	39	0	17	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231017--231207	29	6.7	28	78	7	170	38	5	8	47	1.59
231018--231178	58	2.8	56	83	3	189	37	5	9	46	1.61
235189--235559	184	2.0	185	99	0	735	35	10	6	47	1.64
239870--239937	33	2.1	33	100	0	136	38	11	22	27	1.89
242970--242999	14	2.1	14	100	0	60	40	6	20	33	1.78
251043--251099	22	2.6	22	91	0	87	17	22	31	28	1.97
251205--251335	61	2.1	61	95	0	235	45	7	22	24	1.78
256631--256712	22	3.9	22	87	6	118	15	25	29	29	1.96
256818--256948	61	2.1	61	97	0	244	45	6	22	25	1.77
262231--262328	22	4.5	22	90	0	151	14	26	29	29	1.95
262455--262646	61	3.1	61	98	0	366	44	6	23	25	1.78
266509--266555	21	2.2	21	84	0	67	19	27	17	36	1.93
266610--266703	41	2.3	41	87	3	138	26	19	18	36	1.94
266509--266766	142	1.8	143	90	0	419	31	20	19	28	1.97
266551--266766	20	10.6	20	79	4	148	34	18	19	26	1.96
267404--267478	20	3.8	20	77	7	82	13	24	16	46	1.82
269173--269531	94	3.9	94	94	2	584	20	12	18	47	1.81
269641--269736	19	5.3	19	79	14	112	50	23	18	7	1.72
269760--269839	33	2.4	33	93	0	133	10	21	22	46	1.81
269781--269863	19	4.5	19	72	17	77	12	20	20	46	1.82
270309--270375	21	3.2	21	64	6	55	25	35	17	20	1.95
270287--270375	42	2.1	42	81	8	101	24	35	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271717--271752	14	2.6	14	95	0	63	33	0	22	44	1.53
271911--272061	19	8.7	19	66	21	98	13	23	19	44	1.85
271915--272041	33	3.8	33	96	0	227	13	23	18	44	1.85
272028--272068	20	2.0	20	85	0	55	17	19	24	39	1.92
274578--274645	24	2.8	24	79	0	73	39	20	14	25	1.91
275504--275702	41	4.8	41	87	5	260	38	17	22	21	1.93
275493--275702	61	3.4	62	83	10	263	37	17	22	22	1.94
275504--275702	21	9.7	21	84	4	228	38	17	22	21	1.93
276169--276243	30	2.5	30	86	2	107	49	14	16	20	1.80
276247--276291	21	2.1	21	87	0	63	55	0	11	33	1.35
280729--280793	29	2.2	28	86	7	94	50	10	3	35	1.53
287138--287175	17	2.3	17	90	4	60	57	5	0	36	1.21
287153--287198	24	1.9	24	86	8	67	65	4	0	30	1.12
303434--303464	10	3.0	10	90	9	53	77	0	9	12	0.99
304020--304061	19	2.2	20	82	4	50	28	14	21	35	1.92
305919--305990	21	3.3	22	88	9	94	23	16	27	31	1.96
307697--307749	26	2.0	26	100	0	106	43	15	15	26	1.85
308337--308397	13	4.4	13	73	20	52	24	1	3	70	1.11
315968--316022	23	2.4	23	100	0	110	12	3	30	52	1.56
316545--316602	3	19.7	3	82	10	75	65	0	3	31	1.09
317858--317899	2	21.0	2	100	0	84	50	0	0	50	1.00
320145--320279	33	4.0	34	87	7	188	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326226--326299	37	2.0	37	91	0	121	32	13	21	32	1.92
327548--327608	30	2.0	31	90	3	97	16	45	21	16	1.85
327561--327600	18	2.3	17	95	4	71	17	47	22	12	1.81
327548--327608	13	4.4	13	75	22	61	16	45	21	16	1.85
330139--330257	24	5.0	24	87	6	170	25	16	19	38	1.92
330373--330467	43	2.2	43	96	0	172	16	10	35	36	1.84
331794--331842	26	1.9	25	87	4	71	42	16	6	34	1.73
331793--331842	25	1.9	26	88	8	75	42	16	6	36	1.72
331974--332264	147	2.0	147	88	2	433	34	18	12	35	1.88
332700--332741	2	21.0	2	100	0	84	50	0	0	50	1.00
333046--333114	2	34.5	2	100	0	138	49	0	0	50	1.00
336614--336923	157	2.0	151	95	3	557	28	25	25	20	1.99
343719--343748	16	1.9	15	93	6	51	53	20	0	26	1.46
345135--345497	55	6.6	54	80	7	349	30	22	17	29	1.97
345157--345509	110	3.2	109	85	4	431	29	23	17	29	1.97
345157--345492	165	2.0	165	82	5	412	30	22	18	28	1.97
346949--346982	9	3.6	9	85	14	50	11	14	0	73	1.10
346856--346959	7	14.7	7	76	22	85	9	17	0	73	1.09
346847--346980	28	4.8	29	76	16	106	10	16	0	73	1.10
351950--351989	15	2.7	15	96	0	71	32	17	20	30	1.95
355433--355470	17	2.2	17	95	0	67	36	10	44	7	1.68
359131--359228	45	2.1	45	84	5	124	38	17	12	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361372--361401	16	1.9	15	93	6	51	53	20	0	26	1.46
362811--363111	55	5.5	54	75	12	161	33	22	15	28	1.95
362837--363165	110	3.0	110	82	5	346	32	23	15	28	1.95
362923--363168	55	4.5	55	83	7	261	34	23	14	27	1.94
364514--364807	8	38.4	8	75	19	126	10	14	0	73	1.13
364514--364807	16	18.7	15	74	17	144	10	14	0	73	1.13
364514--364735	24	9.5	24	78	20	183	10	14	0	73	1.11
364654--364683	12	2.5	12	100	0	60	13	13	0	73	1.10
364514--364735	8	30.4	7	77	16	138	10	14	0	73	1.11
364663--364809	9	17.2	9	71	24	65	11	15	0	72	1.17
364634--364813	11	15.8	11	65	22	61	11	15	1	72	1.17
366863--366892	16	1.9	15	93	6	51	53	20	0	26	1.46
369446--369498	25	2.1	26	96	3	99	43	3	7	45	1.50
373257--373308	24	2.2	24	89	0	77	38	17	13	30	1.88
374049--374102	24	2.2	24	96	0	99	18	0	20	61	1.35
377669--377696	3	9.3	3	100	0	56	35	0	0	64	0.94
383031--383069	20	2.0	20	89	0	60	35	10	20	33	1.86
384759--384809	26	2.0	26	84	7	68	17	7	5	68	1.34
396689--396850	40	4.1	40	90	0	252	25	14	25	33	1.94
397505--397538	12	2.9	12	86	4	52	26	20	20	32	1.97
399928--400087	6	27.7	6	79	11	144	80	1	16	1	0.86
399932--400085	13	11.7	13	76	16	115	79	1	16	1	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399929--400089	33	5.2	32	75	16	162	80	1	16	1	0.86
403840--404002	40	4.1	40	88	1	254	23	14	26	34	1.94
403840--404002	81	2.0	80	91	1	263	23	14	26	34	1.94
404107--404295	45	4.2	45	87	4	249	39	7	20	31	1.81
404209--404318	44	2.8	37	67	19	87	39	4	22	33	1.75
406645--406855	64	3.2	64	76	10	214	26	18	23	31	1.97
407153--407185	12	2.5	13	90	9	50	39	9	15	36	1.79
407499--407591	2	46.5	2	100	0	186	50	0	0	49	1.00
408177--410601	830	2.9	829	96	0	4499	34	16	19	29	1.94
411207--411264	23	2.7	21	81	5	62	20	25	27	25	1.99

Tables:   1   2   3   4   5