genome.fa.s8465.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008465.1 Hibiscus syriacus cultivar Beakdansim tig00111278_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  924357

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 561 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419626--420004	45	8.6	45	85	4	459	27	22	11	37	1.89
419653--420003	130	2.7	132	86	3	476	28	22	11	37	1.89
420039--420195	81	1.9	81	85	2	217	29	22	10	36	1.87
420126--420530	67	6.0	67	85	0	533	28	23	14	33	1.94
420754--421073	67	4.8	67	92	0	514	31	15	25	28	1.95
421213--421612	45	8.9	45	82	3	439	35	10	23	31	1.88
421827--421889	2	31.5	2	100	0	126	49	0	0	50	1.00
426981--427019	20	2.0	20	94	0	69	25	15	15	43	1.86
427034--427072	13	3.0	13	96	0	69	38	17	15	28	1.91
435065--435089	13	1.9	13	100	0	50	36	24	16	24	1.94
435518--435553	17	2.1	17	89	5	54	44	0	0	55	0.99
443671--443711	21	2.0	21	95	0	73	46	4	9	39	1.58
457271--457390	37	3.2	37	82	5	152	35	21	16	25	1.94
457418--457693	133	2.1	133	93	0	480	35	13	20	30	1.91
457541--457936	209	1.9	213	85	5	561	31	16	19	31	1.95
457993--458058	22	3.1	22	70	16	66	30	16	19	33	1.94
457984--458068	42	2.0	42	88	0	125	29	21	18	30	1.97
458107--458190	42	2.0	42	80	0	96	22	20	25	32	1.98
457985--458240	122	2.1	122	87	1	370	30	19	19	29	1.97
458156--458426	93	2.9	93	93	0	461	32	18	21	28	1.97
458415--458852	42	10.0	42	70	12	263	29	18	21	31	1.96
458586--458656	20	3.5	19	71	16	61	23	21	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458583--458673	22	4.3	21	71	15	64	24	21	20	32	1.98
458416--458940	177	3.0	176	91	1	793	30	18	20	31	1.96
458714--458738	13	1.9	13	100	0	50	32	24	20	24	1.98
458775--458836	20	2.9	22	76	16	76	29	16	24	30	1.96
461907--461955	2	24.5	2	100	0	98	51	0	0	48	1.00
464217--464485	89	3.0	90	91	3	418	29	23	23	22	1.99
470768--470853	2	42.5	2	88	2	127	46	3	2	47	1.32
473138--473191	25	2.2	25	96	0	99	55	9	29	5	1.54
475052--475115	23	2.8	24	79	9	80	43	6	23	26	1.77
475373--475432	27	2.2	27	81	0	66	56	13	13	16	1.67
477714--477787	34	2.2	34	100	0	148	55	10	13	20	1.68
482638--482752	24	4.8	24	84	4	151	40	19	15	24	1.90
483865--483898	18	1.9	18	88	5	52	29	20	0	50	1.49
485190--485247	13	4.3	13	84	4	71	18	22	41	17	1.90
488254--488304	19	2.7	19	87	6	59	47	0	49	3	1.20
488254--488295	19	2.2	19	95	0	75	42	0	52	4	1.22
495355--495571	53	4.2	53	82	4	264	35	11	19	33	1.88
496751--496793	22	2.0	22	85	0	59	39	4	2	53	1.34
496781--496838	23	2.6	22	76	12	57	34	5	6	53	1.50
499700--499767	32	2.1	32	94	0	118	44	17	11	26	1.83
500535--500600	17	3.8	17	95	2	114	30	9	31	28	1.88
504145--504186	19	2.2	19	91	8	68	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504140--504190	19	3.2	15	75	21	50	47	0	0	52	1.00
504135--504193	15	3.7	15	74	24	57	44	1	0	54	1.10
504787--504819	13	2.5	13	100	0	66	15	12	24	48	1.78
506732--506783	2	27.0	2	88	7	81	50	0	0	50	1.00
506712--506786	32	2.3	32	75	11	80	44	2	0	53	1.14
513536--513584	22	2.2	23	82	10	57	51	22	2	24	1.59
516002--516031	15	2.0	15	100	0	60	60	13	0	26	1.34
516818--516885	32	2.1	32	94	0	118	44	17	11	26	1.83
518543--518616	37	2.0	37	86	0	103	31	9	21	37	1.85
520114--520161	24	1.9	26	87	8	73	52	8	4	35	1.51
531990--532026	19	1.9	19	88	0	56	70	0	0	29	0.88
531998--532061	28	2.4	26	77	10	67	65	1	1	31	1.11
532151--532197	24	1.9	25	86	4	69	80	10	0	8	0.89
532269--532311	18	2.4	18	88	7	61	69	0	9	20	1.15
533266--533339	34	2.1	35	82	7	89	43	9	4	43	1.56
534250--534274	2	12.5	2	100	0	50	48	0	0	52	1.00
535565--535595	2	16.0	2	93	6	55	51	0	0	48	1.00
542844--542883	21	1.9	21	85	10	55	35	10	2	52	1.48
545214--545289	30	2.6	27	77	18	73	72	2	3	21	1.13
545216--545291	39	2.0	38	82	7	91	73	2	3	19	1.11
546908--547847	124	7.6	124	90	0	1441	26	16	24	33	1.96
549067--549267	95	2.1	95	93	0	339	33	18	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551565--551640	32	2.4	31	75	4	80	63	2	5	28	1.30
552376--552427	10	5.2	10	84	15	72	71	0	0	28	0.87
552373--552430	3	19.3	3	86	13	84	70	0	0	29	0.87
555788--555838	24	2.2	23	92	3	84	37	15	13	33	1.87
561550--561594	16	2.8	17	86	6	58	48	4	0	46	1.22
561809--561860	20	2.7	20	88	8	72	42	23	19	15	1.89
561870--562208	20	16.5	20	74	14	235	37	25	17	18	1.93
561847--562206	41	8.8	41	84	7	428	37	25	17	18	1.93
562748--562822	21	3.6	21	81	3	107	48	17	24	10	1.79
562836--562957	33	3.5	33	82	13	147	12	22	19	45	1.83
562893--562955	20	3.2	20	73	8	65	14	20	17	47	1.82
564645--564868	94	2.4	94	93	2	371	22	13	17	45	1.84
564966--565094	19	7.3	19	72	19	91	48	22	19	10	1.78
564982--565094	19	6.5	19	74	19	111	48	21	20	9	1.77
565000--565057	14	3.8	14	73	20	53	50	18	22	8	1.74
564982--565083	33	3.1	33	92	0	168	49	19	21	9	1.77
565048--565100	19	2.8	19	85	0	70	45	22	18	13	1.84
565090--565290	19	11.6	19	76	15	127	9	21	22	45	1.81
565114--565168	14	3.6	14	73	21	56	9	23	21	45	1.80
565095--565239	33	4.2	33	84	8	191	8	21	22	46	1.79
565090--565268	52	3.5	52	73	12	158	8	22	22	45	1.80
565216--565253	14	2.7	14	95	0	67	7	28	21	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567156--567188	14	2.4	14	94	0	57	36	0	21	42	1.53
567097--567268	84	2.1	83	90	4	244	35	2	18	43	1.65
567396--567450	14	3.6	14	73	21	56	45	20	23	10	1.82
567378--567509	33	3.8	33	91	7	192	45	18	22	13	1.84
567378--567561	19	10.4	19	77	17	200	46	17	22	13	1.83
567502--567580	33	2.4	33	97	0	149	45	18	22	12	1.84
567570--567766	20	10.7	19	79	13	225	16	21	17	44	1.86
567570--567766	39	5.3	38	83	11	225	16	21	17	44	1.86
567608--567738	59	2.2	59	93	2	219	16	22	14	46	1.83
567667--567799	33	3.8	34	83	10	135	13	21	20	45	1.85
567772--567845	20	3.7	20	71	16	62	21	17	25	35	1.95
569568--569635	33	2.0	34	97	2	129	33	20	14	30	1.93
570279--570331	24	2.2	24	89	0	79	39	20	16	22	1.92
571013--571284	20	13.4	20	82	4	312	19	16	25	38	1.92
571011--571284	41	6.8	41	91	3	330	18	16	25	39	1.92
571013--571345	82	4.1	82	86	5	387	19	16	24	39	1.92
571293--571345	20	2.7	20	94	5	90	15	18	22	43	1.87
572845--572907	26	2.4	27	75	17	62	46	3	4	46	1.40
579958--580173	108	2.0	107	99	0	423	25	22	16	36	1.94
583383--583480	23	4.4	22	72	13	76	34	25	22	17	1.95
583421--583489	23	3.0	23	73	0	75	34	21	24	18	1.96
584973--585045	23	3.3	23	77	11	80	17	26	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584973--585065	23	4.2	23	81	9	77	19	25	21	33	1.97
592949--592978	2	15.5	2	93	6	53	50	0	0	50	1.00
595665--595693	14	2.0	15	93	6	51	58	13	0	27	1.36
596775--596805	15	2.0	16	93	6	55	61	12	0	25	1.32
597574--597635	30	2.1	30	87	6	90	41	19	11	27	1.85
599291--599364	37	2.0	37	97	0	139	31	13	22	32	1.93
600935--600969	13	2.7	13	100	0	70	54	8	5	31	1.54
601456--601687	115	2.0	116	89	4	353	24	13	23	38	1.91
610689--610739	23	2.3	23	96	3	95	19	37	23	19	1.94
616325--616410	21	3.9	22	79	11	86	23	30	25	20	1.99

Tables:   1   2   3   4   5