genome.fa.s8489.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008489.1 Hibiscus syriacus cultivar Beakdansim tig00111331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1108073

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306053--306273	64	3.5	64	87	2	284	33	20	19	27	1.96
307010--307226	103	2.1	103	95	0	389	26	14	22	36	1.92
307234--307311	23	3.3	23	81	1	93	24	20	23	32	1.98
311408--311588	64	2.8	64	88	3	222	35	18	17	27	1.94
311449--311625	64	2.8	64	92	1	284	32	20	18	28	1.96
312362--312579	103	2.1	103	95	0	400	26	13	23	36	1.92
312586--312663	23	3.3	23	81	1	93	24	20	23	32	1.98
316425--316478	16	3.3	16	82	10	65	81	0	5	12	0.85
316433--316478	17	2.8	16	90	6	74	80	0	6	13	0.89
316425--316491	17	3.9	17	76	19	61	79	0	8	11	0.95
317689--317986	113	2.6	114	90	0	445	31	19	24	24	1.98
318687--318870	70	2.6	73	86	3	275	33	22	21	22	1.97
318687--318870	36	5.1	37	88	5	270	33	22	21	22	1.97
318995--319092	42	2.3	42	85	0	133	23	26	21	28	1.99
319011--319088	22	3.6	22	67	19	65	25	23	21	29	1.99
319196--319297	42	2.5	41	83	1	132	24	22	22	30	1.99
319616--319683	20	3.3	20	67	15	57	23	23	22	30	1.99
319620--319710	42	2.2	42	89	0	137	23	24	20	31	1.98
318938--320368	205	6.9	205	89	4	2120	31	16	20	31	1.94
318873--320368	625	2.4	625	94	0	2620	31	16	20	31	1.94
320249--320348	42	2.4	42	91	0	155	26	22	21	31	1.98
325312--325469	21	7.8	20	70	7	77	39	24	17	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325437--325646	20	10.5	20	80	5	192	37	25	17	20	1.94
326358--326404	24	2.0	24	83	8	60	27	14	19	38	1.91
326579--326603	12	2.1	12	100	0	50	72	0	28	0	0.86
328902--329105	72	2.8	72	86	6	290	46	17	21	14	1.83
328888--329157	105	2.6	101	90	8	364	45	17	22	14	1.84
328888--329157	53	5.1	52	89	8	406	45	17	22	14	1.84
328879--329162	72	4.0	68	78	13	265	45	17	22	14	1.85
329153--329255	19	5.6	19	84	13	153	14	23	17	44	1.85
329362--329398	14	2.6	14	91	0	65	45	21	0	32	1.52
330036--330213	19	9.6	19	82	6	177	46	24	19	10	1.81
330052--330208	52	2.9	55	84	4	194	47	23	19	9	1.78
330203--330267	19	3.7	19	76	19	77	10	16	27	44	1.81
330225--330283	14	3.9	14	76	20	64	8	16	27	47	1.76
330209--330332	33	3.7	33	89	1	176	9	17	26	45	1.79
330430--330838	93	4.4	93	98	0	791	45	19	13	21	1.84
332525--332621	20	5.2	20	72	18	100	46	17	24	11	1.81
332523--332587	21	3.1	21	82	4	96	47	15	26	10	1.78
332572--332628	14	3.7	14	75	20	60	43	22	24	8	1.81
332523--332645	33	3.5	33	90	8	165	46	18	24	10	1.81
332662--332718	14	3.7	14	75	20	60	8	24	22	43	1.81
332646--332725	33	2.4	33	95	0	142	8	21	22	47	1.78
332706--332779	21	3.5	21	77	14	89	14	20	16	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332859--332929	33	2.2	33	94	0	124	47	16	23	11	1.79
333309--333502	20	9.6	20	84	5	239	18	18	27	35	1.94
333787--333835	22	2.2	23	85	3	64	18	14	24	42	1.87
334626--334678	22	2.4	22	87	0	79	28	35	16	18	1.93
341245--341963	84	8.7	83	76	8	687	23	21	25	29	1.99
341245--341956	165	4.3	165	89	1	937	24	20	25	29	1.99
345737--345771	6	5.8	6	100	0	70	51	0	0	48	1.00
349173--349206	18	1.9	17	88	5	50	32	0	0	67	0.91
359157--359210	20	2.8	19	74	17	58	81	0	14	3	0.82
359158--359210	6	8.7	6	82	15	56	81	0	15	3	0.83
360264--360600	106	3.3	103	80	12	363	33	25	20	20	1.97
360370--360558	94	2.0	95	90	1	299	33	25	20	20	1.96
362694--362749	2	28.0	2	100	0	112	50	0	0	50	1.00
368789--368992	102	2.0	102	100	0	408	31	12	19	36	1.90
378945--379424	160	3.1	157	82	5	573	47	5	18	28	1.70
379882--380003	59	2.1	59	81	6	140	32	15	18	33	1.92
393246--393280	18	1.9	18	88	0	52	45	25	5	22	1.74
395165--395211	20	2.4	19	89	10	76	55	10	17	17	1.69
394953--395425	181	2.6	182	88	0	678	42	14	16	27	1.86
395346--395384	20	2.0	20	85	10	53	53	10	15	20	1.70
397508--397536	15	1.9	15	100	0	58	20	6	55	17	1.65
397621--397685	21	3.1	21	86	0	85	41	10	32	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397719--397784	33	2.0	33	87	0	96	30	0	46	22	1.52
399579--399627	19	2.6	19	96	0	89	32	2	10	55	1.45
399740--400818	396	2.8	391	90	4	1642	36	15	18	29	1.91
399740--400886	197	5.8	200	90	5	1707	36	15	18	30	1.91
400685--401224	267	2.0	272	96	3	995	33	14	16	35	1.89
402497--402620	18	6.9	18	82	0	122	37	8	33	20	1.83
402510--402620	6	18.5	6	80	0	114	36	9	33	20	1.84
402497--402620	12	10.3	12	89	0	158	37	8	33	20	1.83
403824--404930	183	6.1	183	94	2	1856	35	14	16	33	1.90
407683--407755	23	3.2	23	86	0	101	35	4	19	41	1.70
410380--410442	3	21.0	3	90	0	99	34	1	28	34	1.67
417489--417522	14	2.4	14	86	13	52	5	8	5	79	1.05
419626--419944	159	2.0	159	100	0	638	36	11	16	34	1.86
421978--422021	2	22.0	2	90	0	61	43	0	6	50	1.29
426590--426629	20	2.0	20	85	0	53	32	0	0	67	0.91
431476--431598	61	2.0	61	100	0	246	32	19	20	27	1.97
440163--440192	7	4.4	7	91	8	53	0	30	0	70	0.88
441577--441649	30	2.4	30	97	0	137	24	19	24	31	1.98
441780--441828	20	2.5	19	87	6	71	22	8	14	55	1.65
444694--444732	20	2.0	20	85	10	53	30	10	28	30	1.90
445671--445733	3	21.7	3	83	6	85	36	3	0	60	1.13
445681--445733	20	2.7	20	87	0	79	37	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446149--446186	18	2.1	18	90	9	60	57	13	28	0	1.36
447633--447665	9	3.8	9	84	8	50	45	0	0	54	0.99
449534--449569	15	2.4	15	90	0	54	50	11	22	16	1.77
449542--449573	15	2.1	15	100	0	64	46	6	25	21	1.74
456578--456914	46	7.3	46	90	0	485	21	23	11	43	1.85
456666--456914	26	10.9	20	66	22	102	22	22	11	43	1.85
460651--460706	21	2.7	21	88	0	76	37	32	12	17	1.88
466979--467060	21	3.9	21	72	0	74	36	23	15	24	1.94
470193--470305	44	2.6	44	90	2	165	31	21	18	28	1.97
476696--476733	19	2.0	19	100	0	76	42	15	15	26	1.87
479575--479638	33	1.9	33	83	0	83	25	32	14	28	1.94
482130--482154	3	8.3	3	100	0	50	32	0	36	32	1.58
487333--487384	2	26.0	2	96	0	95	48	0	0	51	1.00
488867--488931	3	21.3	3	76	20	64	69	0	0	30	0.89
488867--488933	25	2.6	27	83	13	95	70	0	0	29	0.88
488872--488931	25	2.4	26	91	5	97	70	0	0	30	0.88
488867--488941	25	3.1	24	81	7	82	69	1	0	29	0.97
489156--489515	138	2.6	139	85	4	451	26	17	15	40	1.90
489159--489515	139	2.6	138	86	3	450	27	17	15	39	1.90
489545--489761	112	1.9	112	88	1	328	28	18	14	38	1.90
506159--506271	27	4.3	26	71	24	69	76	2	7	14	1.11
506198--506288	28	3.2	29	74	16	91	72	3	7	16	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506158--506291	8	14.6	9	67	20	55	74	2	7	15	1.14
506214--506291	23	3.4	22	77	12	68	73	3	6	16	1.20
506293--506342	15	3.5	15	78	7	52	74	8	4	14	1.20
506471--506515	2	22.5	2	100	0	90	51	0	0	48	1.00
507570--507610	18	2.4	16	92	8	64	48	7	2	41	1.44
507577--507610	16	2.1	16	88	0	50	47	8	2	41	1.50
512438--512472	18	2.0	17	88	5	52	28	17	28	25	1.97
514357--514405	15	3.3	15	78	16	57	44	16	8	30	1.76
518754--518827	32	2.3	32	80	0	94	16	31	29	22	1.96
520490--520564	39	1.9	39	86	0	105	32	13	34	20	1.91

Tables:   1   2   3   4   5   6