genome.fa.s8489.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008489.1 Hibiscus syriacus cultivar Beakdansim tig00111331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1108073

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520502--520584	39	2.1	39	81	0	103	32	12	32	22	1.91
523891--523942	20	2.6	20	76	14	54	61	11	0	26	1.30
525577--525614	18	2.1	18	100	0	76	47	26	10	15	1.78
528113--528199	21	3.9	22	77	10	79	39	12	12	35	1.81
528911--529267	45	8.2	45	84	9	474	20	23	11	44	1.84
528961--529109	76	1.9	77	95	1	273	20	23	10	46	1.80
529007--529077	31	2.3	31	87	2	97	21	23	9	45	1.82
528911--529212	166	1.8	166	93	0	523	20	23	11	44	1.84
529193--529265	24	3.2	24	64	25	57	23	20	10	45	1.83
534347--534417	2	35.5	2	100	0	142	49	0	0	50	1.00
536879--536921	20	2.2	19	87	4	59	55	25	0	18	1.42
542404--542449	23	2.0	23	95	0	83	50	4	2	43	1.34
543580--543651	21	3.4	21	74	14	85	20	19	22	37	1.94
543593--543659	21	3.3	19	73	15	71	25	20	20	32	1.97
543748--543777	6	5.2	6	96	4	53	36	46	16	0	1.47
543769--543801	5	6.6	5	96	0	57	39	24	36	0	1.56
544278--544321	5	8.4	5	97	2	70	0	20	54	25	1.45
544324--544369	21	2.2	21	92	0	74	19	19	32	28	1.96
546613--546651	12	3.2	13	85	10	55	38	5	0	56	1.22
547813--547914	51	2.0	53	83	11	133	29	6	0	62	1.27
547900--547930	2	15.5	2	100	0	62	48	0	0	51	1.00
550590--550668	35	2.2	35	86	6	106	15	13	8	62	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550989--551027	20	2.0	20	89	0	60	33	10	23	33	1.88
558799--558824	13	2.0	13	100	0	52	92	7	0	0	0.39
559200--559238	20	2.0	20	89	0	60	33	10	23	33	1.88
561214--561410	99	2.0	99	86	2	279	35	17	16	30	1.92
562513--562609	42	2.3	42	85	0	140	30	21	21	25	1.98
562565--562810	86	2.9	86	86	0	339	28	24	22	23	1.99
562874--563278	85	4.8	85	85	1	494	34	20	18	26	1.96
564980--565045	30	2.2	30	83	5	80	19	9	10	60	1.56
564980--565070	30	3.1	28	78	12	69	17	9	8	63	1.49
565158--565193	2	18.0	2	100	0	72	50	0	0	50	1.00
565262--565323	26	2.4	26	100	0	124	24	8	0	67	1.17
566584--566622	18	2.2	18	95	0	69	38	7	0	53	1.30
566773--566839	34	2.0	34	82	11	84	43	0	2	53	1.16
566831--566882	23	2.3	23	80	16	63	50	0	0	50	1.00
566767--566882	11	9.8	12	70	17	64	47	0	1	50	1.11
566961--567015	24	2.3	23	87	12	76	50	3	0	45	1.19
566651--567172	249	2.0	271	90	9	865	46	4	2	46	1.36
567080--567131	23	2.3	23	80	16	63	50	0	0	50	1.00
567079--567131	12	4.6	12	75	15	58	49	0	0	50	1.00
572061--572450	116	3.4	115	89	2	586	24	18	22	34	1.96
572148--572770	36	16.9	36	72	11	372	21	20	22	35	1.96
572383--572770	108	3.6	106	83	7	482	20	20	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573600--573634	17	2.1	18	89	10	56	20	28	2	48	1.63
580951--580992	21	2.0	21	95	0	75	52	28	7	11	1.64
587213--587256	2	22.0	2	90	0	70	45	4	0	50	1.22
587647--587715	23	3.0	23	80	0	93	17	23	24	34	1.96
588912--588950	18	2.2	18	90	0	60	35	7	0	56	1.28
589155--589200	24	2.0	23	87	8	67	50	2	0	47	1.13
589334--589384	23	2.2	23	82	6	59	45	0	5	49	1.26
590060--590089	15	2.0	15	100	0	60	60	0	20	20	1.37
590063--590097	15	2.3	15	90	0	52	65	0	17	17	1.27
590188--590239	21	2.5	21	81	6	61	78	1	7	11	1.02
590178--590278	50	2.1	51	80	14	115	77	1	6	13	1.06
590578--590647	34	2.1	34	94	0	122	31	14	11	42	1.81
591115--591310	106	1.8	106	92	2	331	22	18	25	32	1.97
591225--591511	64	4.5	64	89	3	418	20	18	26	33	1.96
591258--591511	129	2.0	130	93	0	438	20	18	26	33	1.96
591756--591879	36	3.4	36	89	0	185	41	11	20	27	1.86
591809--591870	21	3.2	21	65	25	64	45	14	16	24	1.84
591892--592048	37	4.5	37	67	16	127	36	13	21	28	1.91
591799--592048	94	2.6	98	83	9	300	37	13	20	29	1.90
592978--593020	22	2.0	22	95	0	77	23	13	27	34	1.93
593651--593724	23	3.2	22	72	14	60	1	13	8	77	1.06
593671--593740	8	9.1	7	77	20	61	0	15	7	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593665--593719	16	3.4	17	78	7	53	0	16	9	74	1.06
593696--593746	15	3.2	16	79	17	54	0	13	7	78	0.96
596564--596633	34	2.1	34	94	0	122	31	14	11	42	1.81
597906--597936	16	1.9	16	93	0	53	48	19	9	22	1.78
600246--600329	29	2.9	29	75	17	84	39	3	3	53	1.36
606922--606964	14	3.1	14	84	15	63	74	0	0	25	0.82
606912--606964	13	3.9	13	81	18	56	75	0	0	24	0.80
606925--606962	10	3.5	11	86	13	53	76	0	0	23	0.79
606989--607026	17	2.2	17	100	0	76	52	5	5	36	1.47
606996--607177	38	4.8	38	78	12	198	45	8	3	42	1.51
606996--607177	74	2.4	73	84	9	226	45	8	3	42	1.51
608271--608463	96	2.0	96	95	2	352	27	22	17	32	1.97
619466--619516	15	3.4	15	76	10	59	70	0	1	27	0.98
622990--623250	55	4.7	55	83	4	328	27	24	16	31	1.97
622990--623250	111	2.4	110	84	3	355	27	24	16	31	1.97
623242--623420	54	3.3	54	95	0	315	18	26	17	36	1.94
623420--623499	37	2.2	37	84	4	99	20	20	16	43	1.88
623782--623920	37	3.8	36	84	3	163	24	18	21	35	1.96
623781--623920	73	1.9	73	84	5	185	24	18	22	35	1.96
625145--625375	125	1.8	125	86	1	338	26	26	15	32	1.95
628780--628930	72	2.1	72	87	2	214	23	24	11	39	1.89
629615--629722	55	2.0	55	90	0	171	22	22	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633328--633376	6	7.5	6	82	13	53	75	0	0	24	0.80
633330--633395	34	1.9	34	84	6	89	71	0	0	28	0.87
633331--633392	17	3.4	18	82	10	74	70	0	0	29	0.87
633389--633426	17	2.2	17	90	0	58	50	7	5	36	1.54
633418--633574	37	4.3	36	76	15	128	42	9	4	43	1.57
633466--633573	37	2.9	38	84	5	139	43	7	3	45	1.49
635866--635942	34	2.2	35	82	11	88	61	15	1	22	1.42
636961--636998	19	2.0	19	100	0	76	21	31	31	15	1.94
638260--638307	16	2.8	18	78	12	57	62	2	0	35	1.07
644441--644497	20	2.8	21	84	10	82	19	35	29	15	1.93
644463--644547	34	2.5	34	92	3	136	20	34	28	17	1.95
644490--644546	15	3.5	15	72	25	53	19	35	26	19	1.95
644738--644789	20	2.6	20	96	0	95	32	44	11	11	1.77
646064--646122	3	20.0	3	91	3	93	67	1	30	0	1.00
648072--648121	20	2.5	20	90	0	82	22	32	32	14	1.93
648084--648165	20	4.4	19	72	16	73	19	34	25	20	1.96
648097--648181	34	2.5	35	90	1	136	20	32	25	21	1.97
648293--648335	21	2.0	21	95	0	77	23	20	27	27	1.99
649898--649937	21	1.9	21	85	10	55	42	20	0	37	1.52
651194--651277	29	2.9	29	77	11	82	75	1	16	7	1.09
651218--651268	11	4.1	12	76	16	50	74	0	17	7	1.05
653299--653572	59	4.6	60	72	11	224	30	9	16	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653665--653746	42	2.0	42	85	2	112	28	19	20	31	1.97
654317--654806	116	4.2	116	81	2	547	40	17	20	21	1.92
654773--655073	137	2.2	136	81	6	331	39	15	21	23	1.92
655164--655222	9	5.9	10	76	21	61	27	0	0	72	0.84
655173--655222	3	17.3	3	83	8	68	28	0	0	72	0.86
655167--655224	20	3.1	19	85	9	75	27	0	0	72	0.85
659190--659249	30	2.0	30	96	0	111	30	5	20	45	1.72
659331--659384	21	2.6	21	93	0	99	20	33	20	25	1.97
659439--659514	21	3.7	21	91	1	118	21	32	17	28	1.95
659523--659552	10	3.0	10	100	0	60	30	20	30	20	1.97

Tables:   1   2   3   4   5   6