Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008489.1 Hibiscus syriacus cultivar Beakdansim tig00111331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1108073

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 662 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
932027--932657
337
1.9
335
93
3
1106
28
20
14
37
1.91
932725--932974
123
2.0
126
96
3
463
39
10
14
36
1.80
933361--933720
83
4.4
83
97
2
681
35
21
13
29
1.91
933669--933993
52
6.3
52
91
2
512
37
22
14
25
1.92
933669--933993
155
2.1
155
91
2
519
37
22
14
25
1.92
934613--934650
16
2.4
16
82
8
51
57
7
5
28
1.49
934969--935054
1
86.0
1
85
0
118
0
6
0
93
0.37
945784--945831
24
2.1
21
85
11
60
54
2
2
41
1.24
947222--947320
3
33.0
3
85
0
135
63
0
3
33
1.10
950906--951186
138
2.0
138
99
0
553
44
14
8
32
1.77
967376--967445
22
3.2
21
80
8
77
30
14
18
37
1.90
978977--979031
21
2.5
21
82
5
65
21
34
25
18
1.96
986435--986492
20
2.9
20
80
10
73
29
27
17
25
1.97
990571--990620
17
2.9
17
77
11
57
42
6
2
50
1.38
990702--990759
21
2.7
22
72
5
64
25
0
8
65
1.21
990728--990781
23
2.4
22
81
3
54
33
0
3
62
1.12
994336--994388
3
17.7
3
77
14
56
64
0
0
35
0.94
994338--994385
10
4.9
10
82
12
64
64
0
0
35
0.94
994338--994395
28
2.0
31
90
10
95
65
0
0
34
0.93
994642--995161
236
2.2
235
94
1
916
26
18
14
39
1.90
996328--996378
18
2.8
18
90
3
84
52
5
5
35
1.50
996732--996790
16
3.6
16
80
13
66
3
15
0
81
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
996732--996786
17
3.3
16
85
12
67
1
16
0
81
0.77
1004114--1004145
15
2.1
15
94
0
55
46
9
18
25
1.79
1007448--1007503
26
2.2
26
86
0
76
62
1
3
32
1.23
1008307--1008348
18
2.4
17
80
11
50
69
9
0
21
1.17
1009630--1009669
10
4.2
10
81
12
57
65
0
0
35
0.93
1029512--1029567
3
18.7
3
100
0
112
32
0
0
67
0.91
1030629--1030656
3
9.3
3
100
0
56
67
32
0
0
0.91
1030958--1031047
3
30.0
3
100
0
180
33
0
0
66
0.92
1031046--1031083
13
2.9
13
88
11
60
63
0
0
36
0.95
1032489--1032534
13
3.5
13
82
11
58
41
0
0
58
0.98
1033154--1033219
28
2.3
29
80
10
75
33
4
0
62
1.16
1033191--1033233
18
2.4
18
76
7
52
25
4
2
67
1.22
1033225--1033257
15
2.3
15
90
10
52
24
6
3
66
1.28
1043860--1043902
10
4.4
9
82
11
50
81
0
18
0
0.69
1043857--1043904
15
3.2
15
76
8
53
79
0
20
0
0.74
1043857--1043902
19
2.3
20
82
14
60
80
0
19
0
0.71
1045032--1045591
83
6.8
84
97
1
994
28
12
21
37
1.90
1046318--1046987
113
5.9
113
94
2
1139
37
14
18
29
1.90
1047306--1047431
3
41.7
3
95
1
225
34
0
0
64
1.00
1047421--1047453
14
2.3
15
94
5
59
63
0
0
36
0.95
1047863--1047934
24
3.1
24
88
7
96
72
8
19
0
1.10
1048892--1048937
13
3.5
13
82
11
58
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1052832--1052863
2
16.0
2
100
0
64
50
0
0
50
1.00
1056115--1056303
76
2.5
76
94
1
337
20
24
29
25
1.99
1056265--1056307
22
2.0
21
86
4
59
11
23
41
23
1.87
1058637--1058673
19
1.9
19
89
10
58
64
2
10
21
1.37
1058622--1058837
117
1.9
116
82
4
274
50
7
13
28
1.69
1062721--1062747
14
1.9
14
100
0
54
33
14
14
37
1.88
1062901--1063091
94
2.0
94
100
0
382
30
25
7
36
1.83
1071606--1072118
41
12.5
40
66
15
176
32
18
15
33
1.92
1071594--1072118
83
6.4
83
84
3
614
31
17
16
33
1.93
1071849--1072061
42
5.1
42
71
13
179
30
18
15
34
1.93
1072211--1072255
22
2.0
22
95
0
81
20
15
17
46
1.84
1072473--1072510
17
2.2
17
100
0
76
15
13
23
47
1.81
1082638--1082982
42
8.1
43
82
4
333
26
20
17
35
1.95
1085258--1085296
18
2.2
18
90
4
62
61
5
10
23
1.48
1088699--1088741
6
7.3
6
84
10
54
79
0
4
16
0.90
1091581--1091622
18
2.3
19
84
12
61
61
4
9
23
1.45
1101064--1101105
14
3.2
13
77
16
50
52
2
38
7
1.42
1105570--1105602
17
1.9
17
93
0
57
39
9
6
45
1.61

Tables:   1   2   3   4   5   6

The End!