genome.fa.s8512.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008512.1 Hibiscus syriacus cultivar Beakdansim tig00111372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1759229

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281216--281247	15	2.1	16	94	5	57	12	25	31	31	1.92
282956--283008	2	28.0	2	88	11	85	47	0	0	52	1.00
282956--283008	17	3.2	17	89	10	92	47	0	0	52	1.00
282950--283016	19	3.7	18	81	18	86	46	0	0	53	1.00
282963--283007	15	3.0	15	100	0	90	46	0	0	53	1.00
294582--294611	14	2.1	14	100	0	60	43	0	43	13	1.43
304110--304424	157	2.0	157	98	1	614	35	13	18	33	1.90
309897--309946	14	4.2	13	73	26	56	20	14	0	66	1.26
309891--309936	21	2.2	21	96	0	83	13	19	0	67	1.23
309896--309942	21	2.2	22	88	3	69	17	14	0	68	1.22
311082--311371	20	14.7	19	82	6	118	33	26	19	20	1.97
311086--311452	40	9.2	40	87	5	419	34	25	19	20	1.96
311086--311452	60	6.2	60	83	8	419	34	25	19	20	1.96
311122--311452	20	16.5	20	80	14	253	33	25	19	21	1.96
312123--312168	24	2.0	23	87	12	67	26	15	21	36	1.93
312342--312366	12	2.1	12	100	0	50	72	0	28	0	0.86
315186--315259	25	3.0	25	96	2	132	29	16	14	39	1.88
317636--317671	18	2.0	18	88	0	54	22	22	30	25	1.99
319549--319577	13	2.1	14	93	6	51	6	13	20	58	1.58
339051--339183	46	2.9	46	86	3	178	27	12	22	37	1.90
343688--343915	125	1.8	125	83	1	305	32	16	25	25	1.96
345105--345218	37	3.1	37	84	5	142	35	21	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345113--345244	37	3.6	37	80	9	128	34	19	20	25	1.96
345603--346007	54	7.5	54	92	0	666	35	18	25	19	1.95
348901--348980	24	3.3	24	80	3	99	48	15	16	20	1.81
348903--348994	48	1.9	48	84	8	125	47	15	17	19	1.82
348891--348994	24	4.3	24	72	9	70	50	14	16	19	1.79
351478--351502	5	5.0	5	100	0	50	0	20	60	20	1.37
353541--353651	48	2.3	49	83	9	140	50	14	15	19	1.78
353544--353651	24	4.5	24	74	11	96	50	14	15	19	1.79
358425--358466	21	2.1	21	91	8	70	61	14	0	23	1.32
358742--358784	22	1.9	23	85	4	61	51	0	2	46	1.13
359701--359768	24	2.9	23	80	8	75	69	5	0	25	1.11
359734--359764	16	1.9	16	93	0	53	67	6	0	25	1.14
362010--362261	126	2.0	126	97	0	477	39	16	8	35	1.79
365655--365687	15	2.2	15	94	0	57	30	33	21	15	1.94
365772--365845	29	2.6	29	95	2	132	18	21	17	41	1.90
366192--366368	64	2.8	64	81	1	194	27	19	20	32	1.97
366255--366416	64	2.5	64	83	4	184	29	22	16	32	1.96
372674--372746	28	2.6	28	95	4	130	19	21	16	42	1.89
372762--372796	12	2.9	12	100	0	70	40	25	0	34	1.56
373161--373274	19	5.7	19	72	20	90	27	25	15	31	1.96
376179--376224	21	2.2	21	100	0	92	21	32	30	15	1.94
376614--376965	191	1.8	192	80	6	410	34	17	19	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377516--377845	55	6.1	54	83	7	375	29	24	14	31	1.95
377480--377857	164	2.3	160	82	6	415	28	24	15	32	1.95
377516--377883	53	6.8	55	84	6	416	28	24	15	31	1.96
377844--379083	54	23.7	53	78	10	973	24	25	18	32	1.97
377825--379095	104	12.1	105	77	11	1000	25	25	17	32	1.97
377844--378720	51	16.9	50	75	11	416	24	25	18	32	1.97
379251--379433	36	5.1	36	82	7	169	21	19	23	35	1.96
386778--386823	21	2.2	21	100	0	92	21	32	30	15	1.94
387231--387579	192	1.8	194	81	6	449	33	17	19	29	1.95
392193--392277	34	2.5	34	96	0	152	15	24	24	35	1.94
392299--392352	22	2.5	22	90	0	90	33	18	35	12	1.89
392375--392418	23	1.9	23	100	0	88	9	25	40	25	1.84
392372--392425	23	2.4	22	84	9	81	11	24	42	22	1.85
392873--393223	172	2.1	170	89	3	526	39	5	18	36	1.73
395422--395745	47	7.4	42	80	12	245	50	6	3	40	1.43
395462--395977	14	35.9	14	69	16	136	50	5	2	41	1.40
395468--395942	8	63.8	8	70	20	264	50	5	2	40	1.42
395524--395977	23	19.3	23	77	13	328	50	5	3	40	1.42
395499--395898	37	11.0	37	77	15	334	50	6	3	40	1.43
395859--395968	56	1.9	57	90	5	179	50	2	3	42	1.34
397259--397305	18	2.6	18	96	0	85	23	34	14	27	1.94
397714--397779	32	2.1	32	100	0	132	48	24	12	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399950--399988	19	2.1	19	85	9	53	30	0	0	69	0.89
410976--411052	30	2.5	30	89	4	109	38	15	14	31	1.87
412127--412236	29	3.8	29	95	2	186	17	20	16	46	1.84
412611--412767	64	2.5	63	80	10	185	26	17	20	35	1.95
419057--419166	29	3.8	29	93	2	186	17	20	16	46	1.84
419539--419695	64	2.5	63	79	10	176	26	17	20	35	1.95
421164--421254	46	2.0	46	93	0	155	36	7	19	36	1.81
433580--433625	2	23.0	2	100	0	92	50	0	0	50	1.00
435279--435479	97	2.1	97	100	0	402	40	7	23	28	1.82
438476--438500	13	1.9	13	100	0	50	24	8	32	36	1.84
444187--444244	14	4.1	14	88	4	73	22	31	18	27	1.97
444191--444244	28	1.9	28	92	0	90	22	29	20	27	1.98
450071--450108	5	7.6	5	93	0	67	55	0	44	0	0.99
455770--455835	30	2.2	30	86	2	87	37	12	9	40	1.74
468895--468934	14	2.9	14	81	3	55	60	25	10	5	1.49
469191--469222	14	2.1	16	88	11	50	50	18	15	15	1.79
476465--476489	4	6.2	4	100	0	50	24	0	0	76	0.80
477017--477047	7	4.6	7	92	8	55	35	0	0	64	0.94
477017--477047	13	2.3	14	94	5	55	35	0	0	64	0.94
484880--484927	20	2.4	20	100	0	96	43	14	4	37	1.65
485603--485703	37	2.8	36	83	6	114	39	13	14	31	1.86
486175--486244	25	2.8	24	75	18	72	38	5	0	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486180--486235	23	2.5	21	73	18	51	41	5	0	53	1.24
486179--486245	24	2.7	24	69	19	57	38	5	0	55	1.25
486208--486314	48	2.2	50	93	3	182	30	11	1	56	1.45
490194--490244	25	2.0	25	100	0	102	31	11	37	19	1.88
493706--493744	17	2.4	17	95	4	71	51	5	0	43	1.24
496553--496588	2	18.0	2	100	0	72	50	0	0	50	1.00
497435--497506	30	2.4	30	97	0	135	11	11	37	40	1.76
502661--502751	31	3.0	29	70	13	76	50	1	1	47	1.15
502804--502872	19	3.6	18	71	21	52	47	2	1	47	1.25
502867--502911	23	2.0	23	86	0	63	53	2	2	42	1.25
503297--503348	25	2.1	25	96	0	95	48	11	11	28	1.74
508498--508545	16	3.1	16	84	3	62	27	0	4	68	1.07
511475--511515	18	2.3	18	87	4	57	60	0	7	31	1.24
518314--518344	10	3.1	10	90	0	53	48	19	32	0	1.49
518303--518343	20	2.0	20	85	4	55	51	19	29	0	1.47
522634--522660	14	1.9	14	100	0	54	51	7	0	40	1.30
524079--524115	19	1.9	19	88	0	56	32	29	13	24	1.93
524141--524232	20	4.6	20	81	5	80	30	23	20	25	1.99
524801--524917	20	6.2	19	71	16	75	18	18	23	39	1.92
524816--524918	53	1.9	54	82	2	127	16	19	23	40	1.91
524803--524939	73	1.9	73	83	3	177	22	16	19	40	1.91
526826--526874	20	2.5	20	93	0	80	34	26	20	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526896--526928	14	2.4	14	94	0	57	48	15	18	18	1.81
526941--526981	19	2.2	19	90	0	64	14	17	29	39	1.89
526951--527030	33	2.4	33	82	0	88	11	20	22	46	1.82
527022--527070	20	2.5	20	89	0	71	18	18	26	36	1.94
527057--527098	19	2.2	20	95	4	77	14	9	23	52	1.71
527575--527676	21	4.9	21	72	9	91	21	35	19	23	1.96
527575--527697	42	2.9	43	79	7	137	22	35	17	23	1.95
529086--529122	14	2.6	14	95	0	65	29	0	18	51	1.47
529086--529140	28	1.9	29	85	3	76	32	0	18	49	1.48
529244--529297	20	2.7	21	78	16	62	42	25	18	12	1.86

Tables:   1   2   3   4   5   6   7   8   9