genome.fa.s8512.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008512.1 Hibiscus syriacus cultivar Beakdansim tig00111372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1759229

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1646755--1646810	24	2.3	25	78	9	71	46	17	17	17	1.85
1653515--1653562	18	2.7	18	100	0	96	39	12	25	22	1.89
1654042--1654080	20	2.0	20	89	0	60	43	10	20	25	1.83
1654429--1654467	17	2.4	16	83	8	53	28	10	2	58	1.44
1659123--1659163	16	2.6	16	88	11	59	39	9	19	31	1.84
1663962--1663997	19	1.9	19	94	5	65	50	5	0	44	1.25
1664916--1664953	18	2.2	18	90	4	60	57	0	0	42	0.98
1664283--1665073	395	2.0	395	97	0	1494	40	9	8	41	1.67
1666944--1667060	60	1.9	61	98	1	227	37	9	16	36	1.81
1670048--1670092	18	2.5	18	100	0	90	20	15	0	64	1.29
1670499--1670539	5	8.0	5	91	2	55	14	2	4	78	1.03
1671841--1671901	31	2.0	30	84	9	79	13	14	9	62	1.55
1673892--1673945	12	4.4	12	88	4	81	79	7	11	1	1.00
1673871--1673934	25	2.5	25	84	5	83	78	7	10	3	1.07
1673892--1673945	25	2.2	25	90	3	83	79	7	11	1	1.00
1675186--1675485	66	4.7	64	82	6	265	30	11	13	44	1.78
1675226--1675714	66	7.5	66	76	12	386	31	11	14	42	1.81
1675239--1675714	131	3.6	131	75	14	385	31	11	14	42	1.82
1675510--1675582	36	2.0	37	86	7	105	31	10	16	41	1.83
1675515--1675661	36	4.2	36	70	17	94	27	12	16	44	1.83
1675589--1675650	30	2.1	29	82	8	72	32	8	16	43	1.77
1675547--1675714	67	2.5	68	85	2	223	33	11	13	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1675890--1676080	65	2.9	64	78	6	231	26	18	12	41	1.86
1675890--1676111	65	3.4	63	77	9	223	26	19	13	41	1.87
1676157--1676459	136	2.2	135	87	4	423	27	31	16	25	1.96
1678269--1678321	16	3.4	16	78	14	58	18	15	3	62	1.47
1681506--1681728	119	1.9	119	83	3	288	47	7	13	30	1.71
1686123--1686188	21	3.1	22	87	8	68	19	0	10	69	1.17
1686138--1686188	21	2.5	20	93	6	93	15	0	11	72	1.12
1693948--1694002	20	2.8	20	94	0	83	16	25	23	34	1.95
1697534--1697587	20	2.7	20	85	0	72	25	27	22	24	2.00
1697587--1697715	32	4.0	32	79	11	140	35	19	18	26	1.95
1701392--1701425	12	2.7	13	86	9	52	44	8	5	41	1.60
1703764--1703788	11	2.3	11	100	0	50	28	20	16	36	1.93
1705715--1705753	2	19.5	2	100	0	78	51	0	0	48	1.00
1710716--1710753	20	1.9	20	88	0	58	21	26	10	42	1.85
1712474--1712519	19	2.4	19	76	20	51	19	4	2	73	1.10
1714428--1714491	30	2.1	30	88	0	92	23	23	14	39	1.91
1725013--1725101	30	3.0	30	79	9	83	41	6	16	34	1.75
1725180--1725227	25	1.9	25	95	0	87	31	4	14	50	1.62
1732307--1732395	30	3.0	30	79	9	83	41	8	17	31	1.81
1736090--1736411	129	2.5	130	88	1	468	33	9	18	38	1.83
1738102--1738205	44	2.4	43	82	6	111	46	0	4	49	1.23
1740836--1740877	21	2.0	22	86	9	61	59	2	2	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741541--1741580	21	2.0	20	90	5	62	57	0	7	35	1.27
1745195--1745310	60	1.9	60	81	6	137	36	15	4	43	1.66
1753109--1753177	33	2.1	34	94	2	122	8	23	18	49	1.75
1753380--1753429	23	2.2	23	88	0	73	40	8	20	32	1.81
1753386--1753430	23	2.0	23	95	0	81	35	6	22	35	1.80
1753387--1753436	23	2.2	23	88	0	73	42	6	20	32	1.76
1753496--1754157	199	3.3	198	84	6	858	30	16	14	38	1.88

Tables:   1   2   3   4   5   6   7   8   9

The End!