genome.fa.s8521.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008521.1 Hibiscus syriacus cultivar Beakdansim tig00111388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601068

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220004--220066	20	3.0	20	74	17	54	50	0	0	49	1.00
220034--220106	27	2.5	28	81	18	80	53	1	0	45	1.09
220034--220106	29	2.6	28	77	14	78	53	1	0	45	1.09
220112--220155	20	2.2	20	88	4	63	47	0	0	52	1.00
220155--220179	4	6.2	4	100	0	50	76	0	0	24	0.80
220357--220476	42	2.9	42	89	0	186	50	18	12	18	1.77
220769--220824	15	3.6	15	81	9	67	44	10	12	32	1.77
220772--220822	17	3.1	17	80	11	61	45	9	9	35	1.71
220993--221045	21	2.5	21	93	0	88	28	28	22	20	1.99
221281--221379	33	3.0	33	94	1	164	45	15	7	32	1.73
221374--221413	21	1.9	21	94	0	71	47	7	15	30	1.72
223821--223878	27	2.2	26	81	12	64	24	17	12	46	1.81
225423--225477	27	2.0	27	96	0	101	40	14	18	27	1.89
232773--232843	21	3.3	22	84	7	101	26	25	19	28	1.99
235990--236151	65	2.5	64	83	4	182	32	17	20	29	1.96
237522--237584	21	3.0	21	90	4	99	25	26	23	23	2.00
237521--237592	22	3.3	22	88	3	110	26	25	20	27	1.99
240740--240901	65	2.5	64	83	4	182	32	17	20	29	1.96
242276--242338	21	3.0	21	90	4	99	25	26	23	23	2.00
242275--242346	22	3.3	22	88	3	110	26	25	20	27	1.99
249887--249928	22	1.9	22	90	0	66	30	16	7	45	1.74
255827--255867	22	1.9	22	85	5	57	29	17	9	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264444--264502	20	2.9	20	76	18	59	25	0	25	49	1.51
264509--264567	28	2.1	29	81	9	68	49	8	15	27	1.73
265440--265511	36	2.0	36	94	0	126	36	8	9	45	1.67
272386--272472	31	2.6	31	82	14	86	62	3	9	25	1.41
272427--272486	4	14.0	4	76	13	57	68	3	6	21	1.28
272528--272589	8	8.0	8	75	13	58	59	0	1	38	1.07
272529--272571	2	22.0	2	85	4	52	58	0	0	41	0.98
274883--275509	201	3.1	198	83	5	726	27	15	21	34	1.94
274883--275655	403	1.9	403	81	4	916	27	15	21	34	1.94
276298--276385	44	2.0	44	100	0	176	27	4	27	40	1.75
276942--276982	19	2.2	19	86	0	55	56	0	14	29	1.39
276959--277028	26	2.8	25	87	6	90	48	0	15	35	1.46
282002--282057	27	2.1	26	83	9	69	64	10	7	17	1.47
283849--283914	3	21.0	3	78	9	69	65	3	3	28	1.23
286250--286274	2	12.5	2	100	0	50	48	0	0	52	1.00
286500--286561	21	3.0	21	73	21	58	37	0	8	54	1.30
286510--286557	10	4.6	10	78	17	53	37	0	8	54	1.31
286509--286566	21	2.8	21	82	12	66	36	0	8	55	1.31
287534--287647	32	3.6	32	87	2	149	28	30	25	15	1.96
288724--288786	28	2.2	28	83	5	74	22	9	23	44	1.82
302225--302263	21	1.9	21	89	5	62	64	0	15	20	1.30
303230--303280	19	2.7	19	81	6	59	62	5	1	29	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303800--304516	84	8.7	84	78	5	660	24	19	26	30	1.98
303798--304516	164	4.4	164	78	6	743	24	19	26	30	1.98
303805--304521	248	2.9	248	93	0	1211	24	19	26	30	1.98
308968--309007	20	2.0	21	90	5	64	62	0	15	22	1.32
317331--317389	23	2.6	23	94	0	100	23	45	18	11	1.83
320199--320488	150	1.9	150	84	2	386	44	13	21	20	1.86
321907--322037	8	17.1	8	90	8	211	24	11	25	38	1.89
321912--322037	4	31.8	4	71	7	96	24	11	25	38	1.88
322971--323010	20	2.0	20	90	5	62	60	5	0	35	1.19
323172--323240	31	2.2	31	100	0	138	36	10	30	23	1.88
326030--326054	13	1.9	13	100	0	50	48	0	0	52	1.00
337276--337544	138	2.0	137	81	3	317	29	16	27	26	1.97
337434--337656	113	2.0	113	84	0	293	30	17	25	26	1.97
337297--337791	250	2.0	251	81	6	592	28	16	26	28	1.97
337548--338058	138	3.7	138	79	2	526	27	15	27	30	1.96
338062--338313	65	3.9	65	84	4	314	41	12	17	29	1.85
338190--338304	36	3.4	35	71	24	111	41	12	18	27	1.86
338062--338304	130	1.9	131	87	2	364	41	11	17	29	1.85
338266--338307	21	2.0	20	86	4	57	47	16	16	19	1.83
338641--338749	37	3.0	36	85	4	146	35	11	21	31	1.89
340002--340053	2	26.0	2	100	0	104	50	0	0	50	1.00
349980--350028	21	2.3	21	79	6	64	22	24	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350018--350173	21	7.5	21	84	5	176	38	17	21	21	1.93
350076--350254	62	2.9	63	90	3	258	36	23	19	20	1.95
350057--350221	41	4.0	42	74	12	128	38	21	20	20	1.94
350162--350316	20	7.7	20	88	4	177	29	27	19	23	1.98
350055--350216	83	2.0	83	85	7	222	39	20	19	20	1.93
350120--350216	21	4.7	21	74	12	92	40	22	18	18	1.92
350101--350336	62	3.9	60	83	5	251	32	25	19	22	1.97
351046--351099	24	2.2	24	90	0	81	22	16	20	40	1.91
351274--351298	12	2.1	12	100	0	50	72	0	28	0	0.86
353492--353622	19	7.7	19	67	23	94	45	18	24	12	1.83
353492--353618	33	3.8	33	96	0	227	44	18	24	12	1.84
353514--353597	14	5.3	14	68	25	51	44	19	26	10	1.83
353618--353711	19	5.2	19	75	14	83	12	20	22	44	1.85
353628--353712	19	4.7	19	78	14	108	10	21	21	47	1.80
353677--353720	19	2.3	19	88	0	61	15	20	18	45	1.85
353819--353855	14	2.6	14	91	0	65	45	21	0	32	1.52
355717--355931	94	2.3	94	97	0	403	46	20	12	20	1.83
357668--357755	14	5.6	14	71	23	68	43	22	25	9	1.82
357618--357777	19	9.1	19	70	21	125	44	20	24	11	1.84
357618--357772	33	4.5	33	89	5	220	45	20	23	10	1.83
357773--357824	20	2.7	20	78	3	61	11	19	25	44	1.84
358094--358144	27	2.0	26	88	7	68	21	11	35	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358350--358400	20	2.5	20	87	6	68	21	21	21	35	1.96
358397--358456	21	2.9	21	78	9	61	41	18	21	18	1.90
364317--364363	21	2.2	21	96	0	85	17	25	31	25	1.97
369538--369608	32	2.2	32	89	0	124	71	14	7	7	1.28
375457--375501	20	2.2	20	100	0	90	31	40	15	13	1.86
383998--384037	10	4.0	10	86	0	53	27	32	0	40	1.57
384086--384121	17	2.2	17	95	5	65	33	0	2	63	1.08
385870--385932	33	1.9	33	87	6	92	14	41	19	25	1.89
386429--386499	34	2.1	34	87	10	101	19	2	14	63	1.42
392666--392724	16	3.9	16	71	13	52	38	1	1	57	1.19
395206--395578	81	4.6	81	84	3	484	27	24	12	35	1.91
395206--395868	162	4.2	161	79	9	745	28	24	11	35	1.90
395593--395868	81	3.4	81	85	3	367	29	23	9	36	1.87
445626--445750	66	1.9	66	89	0	196	11	28	25	35	1.90
449132--449187	28	2.0	29	86	10	80	25	1	5	67	1.21
451141--451212	24	3.0	24	93	0	117	34	15	23	26	1.94
451148--451222	24	3.1	24	78	14	75	33	17	26	22	1.96
453292--453340	22	2.3	21	82	3	62	20	0	6	73	1.04
453803--453897	29	3.2	29	71	21	88	32	13	2	51	1.53
453794--453945	60	2.5	60	81	0	178	32	15	4	47	1.66
477426--477491	21	3.1	21	84	0	78	19	1	33	45	1.60
477426--477491	7	9.4	7	72	0	60	19	1	33	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480407--480451	22	2.0	22	83	8	56	53	11	6	28	1.61
482696--482820	7	18.3	7	73	8	78	44	33	4	18	1.68
483861--483908	23	2.1	23	92	0	78	35	25	16	22	1.95
483842--483897	12	4.8	12	71	4	51	37	23	16	23	1.93
485002--485047	23	2.0	23	100	0	92	52	17	8	21	1.71
492505--492585	42	2.0	41	85	7	110	43	6	13	37	1.69
494609--494653	14	3.4	14	81	9	58	80	4	6	8	1.03
503687--503731	21	2.2	20	84	4	54	35	24	11	28	1.90
506941--507107	81	2.1	80	86	1	226	32	26	21	19	1.97
512895--512929	12	2.8	12	91	4	52	82	2	2	11	0.88

Tables:   1   2   3   4   5   6   7