genome.fa.s8521.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008521.1 Hibiscus syriacus cultivar Beakdansim tig00111388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601068

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513471--513495	13	1.9	13	100	0	50	28	8	0	64	1.22
517858--517934	38	2.0	38	89	0	118	31	18	14	36	1.90
517896--517986	46	2.0	46	88	0	137	27	16	20	35	1.94
524077--524106	7	4.3	7	100	0	60	43	30	13	13	1.82
527281--527373	31	3.0	31	77	0	105	26	18	13	40	1.88
530407--530444	3	12.7	3	100	0	76	65	0	0	34	0.93
530877--530912	18	2.0	18	100	0	72	44	5	0	50	1.25
531690--531759	27	2.5	28	79	11	72	51	1	0	47	1.09
531878--531924	14	3.4	14	80	11	53	53	0	0	46	1.00
545300--545521	117	1.9	117	82	7	281	47	9	13	29	1.74
549941--549981	16	2.6	16	88	3	57	36	7	21	34	1.82
550149--550195	20	2.3	20	100	0	94	25	25	19	29	1.98
558162--558262	47	2.1	48	82	8	118	41	2	1	53	1.27
558974--559059	45	1.9	45	85	4	120	38	4	2	54	1.34
559892--559960	31	2.2	31	84	0	84	30	23	11	34	1.90
559902--559966	31	2.1	31	91	0	103	24	24	13	36	1.92
561822--561960	72	1.9	71	88	7	210	36	19	23	20	1.95
561824--561960	36	3.8	34	77	10	132	35	19	23	21	1.96
563190--563329	36	3.9	37	77	9	157	38	17	22	22	1.93
565218--565247	15	2.0	15	100	0	60	13	26	46	13	1.80
582105--582147	21	2.1	21	86	4	61	30	6	23	39	1.81
582260--582313	23	2.3	25	81	12	69	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582296--582379	16	5.6	14	75	20	64	63	1	1	34	1.10
582320--582375	29	1.9	29	82	13	71	67	1	1	28	1.10
582893--582951	25	2.4	25	82	0	73	38	15	5	40	1.69
589435--589489	20	2.8	19	83	5	65	27	25	18	29	1.98
591854--591888	13	2.8	12	91	8	61	80	8	11	0	0.92
599071--599117	24	2.0	23	84	12	60	74	0	10	14	1.07
602806--602851	16	2.9	16	75	12	51	30	2	2	65	1.16
604660--604696	18	2.1	18	90	5	58	45	2	0	51	1.15
619273--619319	19	2.4	21	75	10	55	46	8	4	40	1.54
620905--621057	37	4.2	37	96	0	281	43	14	7	33	1.74
642850--643115	130	2.0	134	95	4	486	34	13	13	37	1.85
645156--645285	51	2.5	51	83	2	154	17	34	27	20	1.95
648915--648993	36	2.2	36	82	14	103	56	11	7	24	1.60
651282--651322	18	2.3	18	91	4	66	63	2	4	29	1.28
654016--654089	35	2.1	35	90	2	114	39	10	4	45	1.58
655497--655556	31	1.9	31	82	0	75	48	1	3	46	1.28
657105--657162	18	3.2	18	71	22	50	72	1	3	22	1.09
657122--657174	26	2.2	25	87	12	76	73	0	3	22	0.99
678685--678824	75	1.9	75	83	8	187	32	18	10	38	1.85
678757--678857	37	2.7	36	75	14	98	34	19	7	37	1.81
678889--678997	55	1.9	56	85	7	150	31	21	5	42	1.75
678889--679012	55	2.2	54	80	10	135	31	21	6	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682036--682076	21	2.0	21	90	0	64	34	4	12	48	1.62
686490--686534	17	2.6	17	78	3	54	51	8	2	37	1.46
689340--689546	32	6.5	32	98	0	396	44	9	14	30	1.77
694129--694167	20	2.0	20	90	10	62	46	15	2	35	1.60
699664--699858	73	2.7	73	81	3	205	38	10	6	44	1.65
701011--701061	2	26.0	2	96	4	95	49	0	0	50	1.00
702117--702168	20	2.6	19	76	8	59	32	32	19	15	1.93
702204--702371	20	8.3	20	77	4	176	38	23	17	20	1.93
702204--702379	40	4.3	41	88	0	248	38	23	17	20	1.93
702751--702786	14	2.6	14	90	0	54	30	0	22	47	1.52
702879--702918	20	2.0	21	95	5	73	37	25	22	15	1.93
703851--703904	2	27.0	2	100	0	108	50	0	0	50	1.00
709020--709060	18	2.3	18	95	0	73	0	29	24	46	1.53
710620--710679	23	2.7	22	84	5	75	23	25	28	23	2.00
710893--710941	20	2.5	20	93	0	80	28	10	4	57	1.50
716481--716523	22	2.0	21	86	4	59	11	23	41	23	1.87
717865--717927	23	2.7	23	70	0	63	20	26	20	31	1.98
718220--718253	6	5.7	6	96	0	59	17	11	32	38	1.86
727279--727358	36	2.2	36	97	0	151	31	23	22	22	1.99
729527--729562	6	6.0	6	100	0	72	16	50	0	33	1.46
732809--733030	111	2.0	111	95	1	401	45	10	7	36	1.67
733094--733132	18	2.2	18	90	4	62	66	2	0	30	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733793--733851	21	2.7	22	76	5	75	22	25	20	32	1.98
733865--733902	20	1.9	20	88	0	58	28	15	15	39	1.89
733890--733949	20	3.0	20	87	0	75	26	26	20	26	1.99
737165--737432	140	1.9	140	99	0	527	29	13	15	41	1.86
737403--737681	20	14.9	20	74	14	245	32	21	19	26	1.97
737436--737567	34	3.7	34	81	10	131	34	23	18	24	1.96
737539--737641	54	1.9	54	88	4	154	33	21	21	24	1.97
737519--737661	74	1.9	74	90	2	225	32	21	20	25	1.98
737876--737937	14	4.3	14	77	6	61	46	14	0	38	1.45
739334--739435	21	4.9	21	69	4	71	25	19	34	20	1.96
739324--739435	42	2.7	42	76	2	109	25	17	35	20	1.95
739921--739987	20	3.5	18	82	11	80	37	26	17	17	1.93
739932--739987	20	2.8	20	88	0	85	37	25	17	19	1.94
740030--740073	20	2.2	20	100	0	88	13	20	25	40	1.89
740225--740274	18	2.8	18	93	0	91	42	8	20	30	1.80
741786--741872	20	4.4	20	86	4	115	49	22	16	11	1.77
742258--742299	22	1.9	22	95	0	75	21	11	42	23	1.86
742475--742588	20	5.7	20	87	0	156	25	20	26	28	1.99
742475--742612	60	2.3	60	81	2	161	25	20	24	29	1.99
742613--742671	21	2.8	21	92	0	100	38	16	25	18	1.92
743079--743262	92	2.0	92	98	0	359	15	32	7	45	1.74
748182--748258	14	5.5	14	74	11	59	58	10	12	18	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748299--748356	20	2.8	21	84	10	66	65	10	8	15	1.46
748324--748365	7	6.0	7	78	10	50	59	11	14	14	1.61
751523--751560	2	19.0	2	100	0	76	50	0	0	50	1.00
752907--752955	3	16.7	3	82	4	64	59	0	0	40	0.98
760413--760446	14	2.3	15	90	5	52	38	8	17	35	1.81
760644--760774	31	4.3	29	67	17	70	44	0	5	50	1.24
760649--760717	33	2.1	33	82	12	81	46	0	4	49	1.21
760605--760774	89	1.9	87	82	9	209	45	0	4	50	1.20
760928--760978	23	2.2	23	89	6	77	45	0	1	52	1.12
760930--760976	18	2.6	19	83	6	53	42	0	2	55	1.12
760968--761014	22	2.1	23	88	4	69	53	0	2	44	1.12
760976--761019	22	2.0	22	82	8	54	54	0	2	43	1.12
760924--761085	53	3.1	53	75	15	140	49	0	2	48	1.14
763724--763805	43	2.0	42	85	7	114	58	3	3	34	1.33
763721--763840	45	2.6	48	75	18	119	58	4	4	33	1.36
766838--766896	25	2.5	22	74	15	57	0	18	5	76	0.97
777729--777783	22	2.4	23	72	6	58	70	3	5	20	1.22
777808--777856	2	24.5	2	100	0	98	51	0	0	48	1.00
777861--777909	12	3.8	13	82	15	50	63	2	6	28	1.30
779903--779971	33	2.1	33	100	0	138	18	37	8	34	1.82
785506--785563	30	1.9	31	85	3	82	24	8	8	58	1.56
786831--786913	31	2.7	31	92	1	132	31	14	28	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787008--787093	45	1.9	45	85	4	120	38	4	2	54	1.34
787917--787994	31	2.5	30	85	6	102	28	21	12	37	1.90
795568--796348	3	262.7	3	79	15	833	0	36	0	63	0.95
805033--805088	26	2.2	26	81	12	62	44	7	1	46	1.41
805222--805276	23	2.4	21	77	16	56	52	3	0	43	1.18
805238--805284	21	2.1	23	84	7	62	48	0	0	51	1.00
805343--805408	29	2.3	30	81	7	82	46	1	3	48	1.26
810601--810658	28	2.1	27	84	12	73	20	8	3	67	1.33
811179--811208	13	2.2	14	94	5	53	66	0	0	33	0.92
812192--812558	91	4.0	92	89	2	542	28	23	10	37	1.88

Tables:   1   2   3   4   5   6   7