genome.fa.s8521.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008521.1 Hibiscus syriacus cultivar Beakdansim tig00111388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601068

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
812971--813006	18	1.9	19	88	5	56	52	0	2	44	1.15
812982--813199	116	1.9	114	87	3	321	38	16	11	34	1.83
813345--813373	14	2.0	15	93	6	51	6	31	0	62	1.22
813794--813850	3	19.0	3	100	0	114	33	0	0	66	0.92
816894--816928	18	1.9	18	88	0	52	48	0	0	51	1.00
823029--823105	33	2.3	33	88	0	109	35	12	16	35	1.88
828529--828556	2	14.0	2	100	0	56	0	50	0	50	1.00
831151--831238	43	2.2	41	84	10	110	35	14	15	34	1.89
831612--831856	37	6.5	38	79	9	193	44	3	6	45	1.48
831722--831822	38	2.6	38	85	1	130	45	3	5	44	1.46
831932--831967	15	2.4	15	85	0	54	25	2	0	72	0.98
833101--833165	25	2.6	25	74	13	62	23	7	0	69	1.14
833150--833218	27	2.5	28	80	11	81	20	5	0	73	1.03
833153--833217	33	2.1	33	86	13	93	21	4	0	73	1.00
838270--839199	249	3.7	249	93	1	1470	30	23	20	24	1.98
838261--839208	165	5.7	166	83	4	1067	31	24	20	24	1.98
839813--840055	37	6.5	37	79	9	210	44	3	6	45	1.48
839839--840056	37	5.8	37	80	9	221	44	3	6	45	1.45
840131--840166	15	2.4	15	85	0	54	25	2	0	72	0.98
841299--841363	25	2.6	25	74	13	62	23	7	0	69	1.14
841349--841418	30	2.3	29	79	11	79	21	4	0	74	0.99
841351--841418	36	2.0	36	86	13	99	22	4	0	73	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
846269--846328	29	2.1	29	96	0	111	18	5	30	46	1.70
849021--849140	42	2.9	42	94	0	213	16	19	19	45	1.86
849308--849340	12	2.8	12	86	4	50	42	0	0	57	0.98
849320--849363	22	2.0	23	90	4	72	43	0	0	56	0.99
849358--849403	18	2.6	19	83	10	53	54	4	2	39	1.32
849377--849480	29	3.5	28	75	19	79	43	1	2	51	1.27
849564--849588	10	2.5	10	100	0	50	36	0	0	64	0.94
849806--849875	20	3.5	20	94	0	122	35	14	8	41	1.76
849858--849924	15	4.5	15	84	3	91	34	19	7	38	1.80
849858--849929	30	2.4	30	97	2	137	31	19	6	41	1.78
856539--856583	22	2.0	24	91	8	76	55	0	0	44	0.99
857502--857544	12	3.6	12	81	12	52	32	16	16	34	1.91
857511--857572	24	2.6	24	87	5	81	41	17	8	32	1.79
857511--857572	12	5.2	12	77	14	65	41	17	8	32	1.79
871660--871706	18	2.6	18	86	6	60	14	51	17	17	1.77
873800--873850	20	2.5	20	100	0	102	49	5	19	25	1.71
886115--886151	18	2.2	16	90	9	56	72	5	21	0	1.04
894801--894837	19	1.9	19	88	0	56	27	56	13	2	1.50
894824--894861	17	2.2	17	95	0	67	18	44	26	10	1.82
897640--897716	20	3.8	20	74	3	64	33	23	16	25	1.96
897807--897848	20	2.1	20	86	0	57	33	14	9	42	1.78
901718--901909	32	6.1	32	90	1	291	36	21	16	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905754--905791	18	2.1	18	100	0	76	26	23	15	34	1.95
907951--907986	17	2.1	17	89	0	54	75	2	0	22	0.94
911347--911381	13	2.7	13	90	0	61	68	2	20	8	1.29
918530--918662	61	2.2	61	84	0	167	36	18	21	24	1.95
918530--918630	20	5.0	20	74	11	89	38	15	20	24	1.92
918643--918724	20	4.1	20	82	0	74	30	25	14	29	1.95
918911--918954	22	2.0	22	95	0	79	25	43	13	18	1.86
919238--919277	20	2.0	21	95	5	73	15	15	15	55	1.71
920597--920644	18	2.7	18	93	0	87	27	45	12	14	1.81
921186--921252	20	3.4	20	81	2	73	38	23	22	14	1.92
921300--921358	14	3.9	14	76	20	64	10	16	23	49	1.77
921283--921374	33	2.8	33	98	0	175	11	18	21	47	1.80
921347--921433	20	4.4	20	88	1	122	14	24	24	36	1.93
921360--921459	20	5.1	19	84	6	74	21	19	25	35	1.96
923301--923339	14	2.8	14	84	0	51	35	0	17	46	1.49
923466--923519	14	3.5	14	73	22	54	50	20	18	11	1.77
923551--923638	20	4.4	20	80	5	115	15	21	23	38	1.92
923531--923618	40	2.4	36	83	12	108	15	20	21	42	1.89
923869--923920	20	2.5	21	81	3	61	23	23	15	38	1.92
924693--924746	24	2.2	24	90	0	81	22	16	20	40	1.91
924921--924957	12	3.1	12	100	0	74	72	0	27	0	0.84
927248--927378	19	7.7	19	66	23	94	43	19	22	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927248--927374	33	3.8	33	89	4	202	43	19	22	14	1.87
927249--927381	66	2.0	66	97	0	248	42	19	22	15	1.89
927537--927573	14	2.6	15	83	12	51	51	18	0	29	1.47
931123--931244	20	6.8	19	69	20	84	43	20	23	12	1.86
931172--931227	14	3.6	14	74	21	58	39	25	25	10	1.87
931148--931244	33	2.9	33	95	1	167	41	22	24	11	1.87
931822--931913	20	4.6	20	80	8	114	20	20	18	40	1.92
931881--932051	41	4.2	41	71	8	132	31	18	20	29	1.96
931910--931965	20	2.7	21	80	5	69	42	16	21	19	1.89
931817--931954	61	2.3	62	78	3	154	28	19	18	33	1.96
931903--931975	21	3.5	21	79	3	76	36	17	21	23	1.94
932029--932070	21	2.0	22	86	9	61	40	16	26	16	1.90
932744--932782	17	2.3	17	90	0	60	35	5	5	53	1.45
933245--933289	23	2.0	23	82	8	56	51	2	8	37	1.46
934677--934916	87	2.8	87	85	0	336	45	4	12	37	1.63
934794--934841	23	2.1	23	88	0	69	37	2	20	39	1.65
935056--935124	24	2.9	25	75	18	67	44	1	2	50	1.25
935464--935533	20	3.5	20	92	0	122	64	14	12	8	1.50
938729--939037	162	1.9	164	93	2	534	33	15	13	38	1.86
941936--942721	200	3.9	200	96	0	1430	31	17	14	35	1.91
944544--944603	15	3.9	15	74	21	52	6	43	0	50	1.28
944533--944620	33	2.7	33	92	3	142	4	45	0	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944564--944620	18	3.3	18	72	22	68	1	45	0	52	1.11
944906--944970	21	3.1	21	88	0	94	18	30	9	41	1.82
947188--947660	181	2.6	182	89	1	734	27	16	14	42	1.86
961189--961251	30	2.1	31	91	5	103	47	7	22	22	1.76
962942--963000	26	2.2	28	85	8	79	47	10	5	37	1.59
963341--963413	26	2.8	27	89	6	114	39	1	0	58	1.06
971468--971525	24	2.4	24	82	0	62	25	3	15	55	1.56
971463--971602	67	2.1	67	91	0	226	29	4	12	54	1.56
972690--972732	15	2.9	15	89	0	68	4	39	16	39	1.69
975667--975707	15	2.7	16	88	7	59	51	2	0	46	1.14
977056--977183	12	10.6	12	72	11	100	28	0	14	56	1.39
977124--977193	25	2.8	25	95	0	122	28	0	17	54	1.43
977044--977162	59	2.0	59	82	6	143	28	0	16	54	1.43
978765--979125	4	92.2	4	72	14	65	34	50	14	0	1.47
978763--979048	28	9.9	28	71	13	105	33	51	15	0	1.44
978801--979345	14	38.9	14	72	10	274	36	48	12	2	1.53
979095--979153	18	3.1	18	79	13	64	23	57	15	3	1.53
979167--979364	4	50.5	4	80	4	143	43	43	7	5	1.55
979167--979368	18	11.4	18	74	6	135	44	43	6	5	1.55
979220--979263	9	4.8	9	94	5	79	54	45	0	0	0.99
978797--979364	8	72.0	8	74	4	258	37	48	11	2	1.54
979218--979364	22	7.0	22	79	4	126	46	43	4	5	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979308--979439	4	34.5	4	72	8	51	46	28	3	21	1.66
979393--979430	16	2.4	16	86	0	58	39	34	7	18	1.80
979472--979528	12	4.8	12	80	0	51	31	24	15	28	1.96
979491--979526	16	2.2	16	95	0	63	27	25	22	25	2.00
981961--982012	3	17.7	3	96	4	97	32	0	0	67	0.91
985460--985547	16	5.7	15	82	15	108	82	0	13	3	0.78
985457--985547	39	2.3	38	85	12	123	81	0	14	4	0.84
985460--985547	24	3.7	23	74	22	69	82	0	13	3	0.78
985459--985541	7	11.0	7	82	15	96	81	0	14	3	0.81
987992--988026	15	2.3	15	95	0	61	28	31	22	17	1.96

Tables:   1   2   3   4   5   6   7