Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008521.1 Hibiscus syriacus cultivar Beakdansim tig00111388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601068

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1549366--1549403
20
2.0
18
90
10
58
31
0
0
68
0.90
1552397--1552747
175
2.0
175
96
0
639
25
21
25
27
1.99
1556898--1557042
77
1.9
78
82
7
188
44
3
7
44
1.49
1562263--1562477
114
1.9
116
79
8
251
32
2
11
53
1.51
1562383--1562951
102
5.4
98
71
16
279
31
3
11
53
1.54
1562249--1562948
316
2.2
314
85
8
907
31
3
11
53
1.53
1562700--1562951
102
2.4
106
83
7
318
31
3
11
54
1.51
1570011--1570071
32
1.9
32
100
0
122
50
3
3
42
1.34
1570068--1570160
46
2.0
46
85
8
127
39
12
3
44
1.59
1571120--1571208
39
2.3
39
94
0
151
28
17
20
33
1.95
1573780--1573935
78
2.0
78
97
0
294
35
16
23
25
1.94
1582341--1582414
29
2.5
29
88
2
112
18
24
13
43
1.86
1582413--1582437
12
2.1
12
100
0
50
40
24
0
36
1.55
1582791--1582947
64
2.5
63
77
10
167
26
19
19
35
1.95
1594470--1594533
23
2.9
22
72
4
65
43
3
0
53
1.16
1597146--1598013
6
148.7
6
91
8
1431
33
0
0
66
0.92
1601023--1601058
17
2.0
18
89
10
56
63
2
0
33
1.08

Tables:   1   2   3   4   5   6   7

The End!