genome.fa.s8522.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008522.1 Hibiscus syriacus cultivar Beakdansim tig00111390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1416293

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528563--528599	10	3.9	10	93	6	60	72	0	16	10	1.10
528595--528668	35	2.2	32	81	13	87	75	2	14	6	1.12
529909--530326	53	7.8	53	85	2	516	32	17	26	22	1.97
529909--530326	106	3.9	107	86	1	581	32	17	26	22	1.97
536598--536657	23	2.8	20	76	16	66	40	15	13	31	1.85
551564--551977	184	2.2	184	90	0	632	34	23	16	25	1.95
551816--552113	124	2.4	124	86	0	398	34	22	16	26	1.95
553799--553913	26	4.3	25	69	21	65	20	0	4	74	1.03
553801--553870	17	4.1	16	81	17	70	21	0	2	75	0.93
553853--553915	22	2.8	22	85	2	81	17	1	6	74	1.10
553861--553907	16	2.9	16	84	12	60	17	2	6	74	1.12
553955--554010	3	18.7	3	96	0	103	33	0	0	66	0.92
554084--554204	19	5.8	19	71	21	75	11	9	4	74	1.21
554146--554198	20	2.6	20	80	19	65	5	7	7	79	1.06
554212--554258	25	1.9	24	86	4	67	17	6	2	74	1.12
556837--556882	13	3.5	13	84	0	65	39	23	21	15	1.92
557370--557542	47	3.8	45	83	8	222	32	21	6	38	1.81
557650--557808	40	4.0	40	95	0	291	32	25	17	24	1.97
559812--559890	30	2.7	30	80	9	74	34	18	5	41	1.73
565443--565493	21	2.3	22	83	6	68	29	1	1	66	1.13
567749--567784	19	1.9	18	88	5	54	22	8	2	66	1.31
568833--569016	84	2.2	84	83	3	217	24	21	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568881--569166	84	3.4	84	82	2	324	24	18	24	33	1.97
569153--569328	30	5.4	31	75	15	167	31	10	18	40	1.84
569153--569322	63	2.6	64	80	10	184	32	10	18	38	1.85
569317--569822	164	3.1	163	84	2	710	24	20	24	30	1.98
569643--570015	186	2.0	186	100	0	746	23	20	25	30	1.98
569829--570339	84	6.2	83	78	5	505	25	21	24	29	1.99
569926--570339	164	2.5	165	83	3	537	24	21	24	28	1.99
569852--570339	249	2.0	249	90	1	773	24	21	24	29	1.99
573173--573215	23	1.9	22	86	13	61	11	23	6	58	1.57
579386--579420	13	2.7	13	90	0	52	37	11	20	31	1.88
579592--579712	58	2.1	59	82	1	145	36	16	5	41	1.72
592449--592510	2	31.0	2	100	0	124	50	0	0	50	1.00
599702--599744	10	4.4	10	82	2	52	79	0	20	0	0.74
600212--600318	9	12.0	9	71	16	53	74	1	23	0	0.91
600212--600325	23	4.8	23	66	25	60	73	1	23	0	0.98
600261--600305	17	2.6	18	89	10	76	77	0	22	0	0.76
600205--600324	30	4.1	29	75	15	106	74	2	22	0	0.99
600284--600308	11	2.3	11	100	0	50	84	0	16	0	0.63
600255--600335	26	3.0	27	80	14	94	74	0	24	1	0.90
600255--600338	10	7.2	12	72	15	54	75	0	23	1	0.88
602505--602787	90	3.1	89	94	2	494	25	19	21	33	1.97
606225--606866	137	4.7	137	83	3	763	27	14	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606277--607001	276	2.6	274	83	5	835	27	13	14	44	1.83
612456--613093	138	4.7	138	80	5	695	26	13	14	44	1.83
612455--613223	138	5.6	137	77	7	677	26	13	14	45	1.81
612458--613212	275	2.8	276	81	6	802	26	13	14	45	1.81
614527--614567	20	2.0	21	85	4	57	14	2	17	65	1.37
621394--621889	241	2.1	239	85	3	674	35	15	14	34	1.88
621998--622035	3	12.7	3	100	0	76	68	0	0	31	0.90
622201--622263	28	2.2	28	97	0	117	41	9	19	30	1.83
624531--625235	137	5.1	138	79	5	660	27	13	14	43	1.84
624542--625310	275	2.8	271	78	7	753	28	13	14	43	1.83
624576--625351	137	5.6	137	77	7	462	28	12	14	44	1.82
630083--630125	19	2.2	19	87	4	59	39	2	9	48	1.48
652977--653022	21	2.2	21	84	0	56	36	21	10	30	1.88
654291--654452	60	2.7	60	83	4	193	29	14	16	39	1.88
657930--657975	20	2.3	20	88	0	65	52	19	15	13	1.75
657940--657978	20	2.0	20	100	0	78	53	15	15	15	1.73
657976--658015	20	2.0	20	90	4	64	10	17	22	50	1.76
658194--658241	24	2.0	24	100	0	96	25	8	16	50	1.73
659785--659828	21	2.1	21	83	8	54	18	11	38	31	1.86
660176--660294	21	5.7	21	79	4	123	22	35	19	22	1.96
660174--660294	42	2.9	41	82	2	143	22	34	19	23	1.96
661636--661799	63	2.6	64	91	3	253	28	2	16	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661857--661901	20	2.2	20	96	0	81	35	24	20	20	1.96
662231--662269	18	2.2	18	90	0	60	10	7	15	66	1.43
665292--665330	15	2.5	15	83	4	51	66	0	5	28	1.12
665547--665680	20	6.6	20	66	16	69	28	11	26	33	1.91
665487--665603	40	2.9	40	78	3	128	36	10	22	30	1.87
674620--674681	22	2.7	24	74	23	69	12	19	11	56	1.66
674632--674684	22	2.4	22	96	0	97	13	18	11	56	1.66
675857--675882	12	2.2	12	100	0	52	84	0	7	7	0.77
677717--677771	28	1.9	29	82	10	69	47	3	1	47	1.30
678051--678108	29	2.0	29	100	0	116	41	13	3	41	1.62
679932--680011	3	26.0	3	87	5	115	61	1	2	35	1.18
680242--680305	20	3.2	20	88	0	92	29	25	18	26	1.98
680143--680419	139	2.0	139	91	0	446	33	19	15	32	1.93
689087--689129	20	2.2	20	83	8	52	67	13	0	18	1.23
689552--689628	21	3.5	22	77	13	79	33	16	20	28	1.95
689550--689607	23	2.7	20	78	17	71	34	17	18	29	1.94
695904--695969	19	3.5	19	95	0	114	68	6	1	24	1.21
698476--698599	3	42.0	3	81	15	143	61	0	1	36	1.12
698468--698599	50	2.7	48	81	14	164	60	0	1	37	1.11
698476--698599	32	3.7	34	81	15	152	61	0	1	36	1.12
699893--699963	29	2.4	29	83	2	79	50	1	0	47	1.09
699937--699979	11	4.0	11	84	6	52	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705517--705735	85	2.6	84	79	7	201	29	17	20	32	1.95
706227--706253	13	2.1	13	100	0	54	44	18	29	7	1.77
706689--706755	31	2.2	29	82	15	75	41	11	2	43	1.57
713285--713348	8	8.6	8	70	19	50	67	1	0	31	1.00
713284--713353	13	5.5	12	71	17	52	67	1	0	31	1.00
713296--713356	24	2.6	24	79	10	72	67	1	0	31	1.01
714568--714619	18	2.8	18	75	11	52	40	1	1	55	1.22
715547--715636	37	2.5	35	85	5	117	28	14	24	32	1.94
716336--716403	27	2.5	27	92	0	109	38	16	25	20	1.92
716358--716403	13	3.5	13	79	5	56	34	15	28	21	1.94
717294--717333	2	20.0	2	100	0	80	50	0	0	50	1.00
718205--718247	22	2.0	22	90	0	68	16	23	27	32	1.96
718830--718908	27	2.9	27	94	3	133	41	12	16	29	1.85
719577--719713	35	3.9	35	74	6	116	29	18	18	32	1.96
719583--719716	71	1.9	70	84	1	178	29	19	19	31	1.96
724313--724351	17	2.2	18	86	4	53	56	5	0	38	1.22
725267--725378	3	36.7	3	71	13	77	35	4	1	58	1.29
725269--725351	22	3.6	22	75	12	78	34	4	2	57	1.33
725258--725356	47	2.1	48	90	1	155	35	5	2	57	1.32
725316--725383	29	2.4	28	84	13	95	35	4	0	60	1.17
725273--725376	47	2.2	46	81	6	118	35	4	1	57	1.31
726030--726093	17	3.7	17	82	2	83	34	9	26	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727649--727758	20	5.7	20	87	8	174	37	8	28	26	1.85
727715--727773	16	3.4	16	78	17	73	40	6	25	27	1.80
727655--727773	36	3.2	36	92	4	184	37	8	26	26	1.85
735023--735362	131	2.6	131	83	1	441	40	17	10	31	1.85
737534--738596	265	4.0	265	85	5	1289	29	15	23	32	1.95
737822--738321	249	2.0	250	88	1	743	30	15	23	30	1.95
738070--738617	134	4.1	133	83	1	594	31	14	21	32	1.94
738070--738617	269	2.0	267	82	2	659	31	14	21	32	1.94
742247--742576	164	2.0	164	100	0	660	38	13	13	34	1.84
745533--745588	26	2.2	25	93	3	94	33	30	14	21	1.93

Tables:   1   2   3   4   5   6   7   8