Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008522.1 Hibiscus syriacus cultivar Beakdansim tig00111390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1416293

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 906 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1296128--1296178
21
2.4
21
83
0
75
29
19
19
31
1.97
1297516--1297552
18
2.1
18
100
0
74
16
27
29
27
1.97
1298571--1298624
21
2.6
21
100
0
108
27
25
14
31
1.95
1298665--1298724
21
2.7
23
80
17
72
33
33
16
16
1.92
1300228--1300287
31
2.0
31
90
9
97
28
18
10
43
1.82
1302989--1303033
23
2.0
22
83
12
56
31
0
4
64
1.13
1303003--1303041
18
2.2
18
95
4
71
33
0
2
64
1.08
1305729--1305779
6
8.5
6
97
0
93
35
0
64
0
0.94
1312251--1312290
21
1.9
21
89
0
62
27
0
35
37
1.57
1312973--1313027
20
2.7
21
78
13
69
14
21
38
25
1.92
1312973--1313027
21
2.6
22
80
11
71
14
21
38
25
1.92
1319720--1319806
35
2.5
34
80
12
97
54
9
8
28
1.61
1326355--1326543
57
3.4
57
94
2
303
42
16
20
20
1.89
1326351--1326574
57
4.1
52
88
7
229
41
16
21
20
1.90
1327297--1327396
46
2.2
46
94
1
173
29
16
4
51
1.62
1327521--1327564
16
2.7
16
85
3
52
45
0
0
54
0.99
1330269--1330342
33
2.2
34
86
9
107
22
6
0
70
1.11
1330494--1330557
31
2.1
31
96
0
119
28
9
10
51
1.68
1330500--1330565
31
2.1
31
94
0
114
25
12
12
50
1.74
1338080--1338127
24
2.2
21
82
14
53
39
10
0
50
1.37
1341343--1341472
31
4.2
31
91
2
190
34
22
21
21
1.97
1341947--1341987
18
2.4
18
88
8
59
41
17
4
36
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1342342--1342386
21
2.1
21
87
0
63
15
24
28
31
1.96
1345427--1345582
31
5.0
31
91
1
233
35
21
21
21
1.96
1346059--1346099
18
2.4
18
88
8
59
41
17
4
36
1.71
1346456--1346500
21
2.1
21
87
0
63
15
24
28
31
1.96
1347450--1347589
21
6.7
21
89
1
201
25
27
20
26
1.99
1347453--1347589
62
2.2
63
90
1
213
26
28
19
25
1.99
1347820--1347899
40
2.0
40
100
0
160
40
20
7
32
1.80
1347831--1347897
23
3.2
23
60
24
56
40
19
7
32
1.79
1348327--1348410
43
2.0
41
81
4
96
32
17
2
47
1.61
1349663--1349736
23
3.1
23
76
3
76
64
13
12
9
1.49
1349827--1349861
17
2.1
17
94
0
61
51
14
14
20
1.76
1350001--1350066
31
2.1
31
88
5
98
43
18
16
21
1.87
1350484--1350597
60
1.9
60
81
3
140
36
15
16
30
1.91
1350484--1350615
60
2.2
60
80
8
135
34
16
17
31
1.92
1352897--1352937
3
13.7
3
100
0
82
65
0
0
34
0.93
1360182--1360214
17
2.0
17
88
5
50
48
6
6
39
1.53
1367591--1367634
21
2.1
21
83
8
54
20
13
22
43
1.87
1373975--1374022
20
2.4
20
85
0
69
29
25
22
22
1.99
1375267--1375341
31
2.4
30
84
8
89
54
12
14
18
1.70
1377292--1377346
9
6.3
9
76
14
53
36
0
1
61
1.06
1377290--1377371
17
4.6
17
77
15
69
35
2
2
59
1.24
1377395--1377427
18
1.9
18
88
11
52
27
3
9
60
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1377822--1377865
22
2.0
22
86
0
61
34
4
0
61
1.16
1377833--1377936
29
3.6
28
83
8
122
37
7
2
51
1.45
1377842--1377979
30
4.7
29
76
10
136
39
8
2
50
1.46
1378312--1378402
31
3.0
30
75
9
96
34
2
1
62
1.14
1381455--1381497
2
21.5
2
100
0
86
51
0
0
48
1.00
1381898--1381931
2
17.0
2
100
0
68
50
0
0
50
1.00
1382040--1382073
16
2.1
16
88
5
50
47
0
2
50
1.16
1383177--1383265
31
2.9
31
91
1
135
21
16
10
51
1.73
1385710--1385807
23
4.3
23
88
0
106
41
15
19
23
1.89
1386376--1386547
86
2.0
86
96
0
317
27
18
22
31
1.97
1386547--1386575
10
2.9
10
100
0
58
20
10
58
10
1.60
1387525--1387562
10
3.8
10
86
13
60
60
0
2
36
1.11
1387913--1387967
20
2.5
22
75
25
62
50
0
1
47
1.11
1393099--1393685
134
4.4
135
84
3
704
32
21
14
31
1.94
1393877--1393908
3
10.7
3
100
0
64
65
0
0
34
0.93
1393914--1393955
3
14.0
3
89
0
66
33
0
4
61
1.17
1398490--1398533
23
1.9
23
81
9
54
15
4
2
77
1.04
1403432--1403766
132
2.5
132
87
0
490
33
12
16
38
1.86
1408230--1408260
16
1.9
16
93
0
53
25
0
0
74
0.82
1414044--1414116
32
2.3
32
83
4
85
31
15
19
34
1.92
1415103--1415152
2
26.0
2
92
8
86
48
0
0
52
1.00
1415103--1415152
25
2.0
25
100
0
100
48
0
0
52
1.00

Tables:   1   2   3   4   5   6   7   8

The End!