genome.fa.s8532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008532.1 Hibiscus syriacus cultivar Beakdansim tig00111410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  857509

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872--951	7	11.6	7	80	10	76	11	6	0	82	0.83
872--950	31	2.5	32	84	9	110	10	6	0	83	0.80
872--950	39	2.0	39	83	9	99	10	6	0	83	0.80
872--943	33	2.3	33	88	7	105	9	6	0	83	0.81
2061--2094	3	11.3	3	87	12	52	2	32	0	64	1.08
12354--12394	20	2.0	20	100	0	82	34	19	9	36	1.85
15245--15291	21	2.1	22	88	7	69	31	25	19	23	1.98
15326--15367	21	2.0	21	100	0	84	19	28	38	14	1.90
15403--15465	20	3.2	20	95	0	108	12	28	36	22	1.91
15555--15614	29	2.0	31	93	6	106	43	16	6	33	1.74
15774--15820	22	2.1	22	96	0	85	34	2	8	55	1.42
17789--17858	34	2.1	32	86	5	95	21	31	14	32	1.93
18073--18112	21	1.9	22	90	10	66	12	10	40	37	1.77
18140--18182	21	2.0	21	90	0	68	27	25	20	25	1.99
18218--18259	20	2.1	20	100	0	84	14	28	42	14	1.84
18294--18323	15	2.0	15	93	0	51	16	26	33	23	1.96
18439--18498	29	2.0	29	90	6	93	43	15	6	35	1.72
20989--21059	28	2.5	28	90	0	97	33	12	16	36	1.87
34539--34576	16	2.5	15	84	12	51	28	5	0	65	1.14
35302--35348	24	2.0	24	95	0	85	27	21	17	34	1.95
35536--35568	9	3.7	9	88	12	50	75	0	24	0	0.80
35539--35567	15	1.9	15	100	0	58	79	0	20	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36760--36804	20	2.2	20	92	0	72	22	17	24	35	1.95
36863--37011	64	2.3	64	91	0	244	51	16	2	30	1.55
38378--38476	21	4.7	22	79	8	116	24	20	33	22	1.97
38363--38476	42	2.7	42	87	0	165	25	18	35	20	1.95
42530--42576	22	2.1	22	88	0	67	34	25	4	36	1.76
44374--44436	20	3.2	20	93	4	101	31	11	20	36	1.88
44384--44436	10	5.3	10	77	8	54	32	11	20	35	1.88
47361--47435	35	2.3	34	79	9	84	58	4	4	33	1.35
48639--48731	38	2.5	37	82	3	114	10	10	41	36	1.75
49299--49345	18	2.7	18	90	3	69	27	27	8	36	1.86
54853--54886	18	1.9	17	94	5	59	41	11	23	23	1.87
55697--55803	23	4.7	23	83	0	133	27	18	23	30	1.98
61150--61210	14	4.8	12	78	13	59	80	4	13	1	0.95
61150--61210	26	2.3	26	81	15	72	80	4	13	1	0.95
61171--61214	14	3.1	14	86	3	61	81	0	15	2	0.78
61165--61210	13	3.8	12	81	18	51	82	0	15	2	0.76
62988--63094	42	2.6	42	77	1	126	27	21	19	31	1.97
63248--63331	42	2.0	42	86	4	116	28	20	19	32	1.96
62866--63819	259	3.7	259	89	2	1395	34	14	16	34	1.89
63529--63608	41	1.9	41	82	2	97	26	18	20	35	1.95
63934--64062	8	15.2	8	66	18	57	75	0	20	3	0.95
63934--64055	9	13.2	9	66	17	63	76	0	19	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63949--63997	19	2.7	18	76	17	55	75	0	18	6	1.00
63937--64048	56	1.9	59	84	8	151	75	0	20	4	0.98
63932--64087	7	21.6	7	71	17	97	75	0	21	3	0.97
65332--65447	42	2.8	42	94	0	205	18	18	18	45	1.86
65646--65816	29	6.0	28	68	22	90	46	1	1	51	1.16
65637--65697	22	2.8	23	82	7	65	47	0	0	52	1.00
65832--66001	90	1.9	86	80	9	191	50	4	0	44	1.22
66156--66222	15	4.5	15	81	3	82	32	17	10	38	1.84
66156--66226	30	2.4	30	92	2	117	30	16	9	42	1.81
68718--68769	15	2.9	18	78	21	65	32	9	17	40	1.82
68713--68767	16	3.2	16	76	20	58	34	9	18	38	1.82
72198--72242	24	1.9	23	86	4	63	62	2	26	8	1.37
75344--75512	35	4.8	36	83	5	139	40	5	12	41	1.65
75387--75552	35	4.8	35	88	0	163	45	4	10	39	1.59
75348--75584	70	3.4	70	78	3	194	45	4	10	40	1.57
75457--75617	34	4.8	33	83	9	155	48	1	9	40	1.46
75624--75700	22	3.5	21	75	16	59	40	3	11	44	1.59
75633--75705	22	3.2	22	80	11	76	41	2	9	46	1.51
75707--75765	3	19.7	3	89	6	93	32	1	0	66	1.02
76972--77029	30	1.9	31	82	10	75	20	8	0	70	1.13
77049--77077	5	5.8	5	100	0	58	0	0	17	82	0.66
77069--77133	15	4.6	14	75	16	55	15	6	1	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85669--85967	35	8.5	35	84	4	327	44	5	8	41	1.57
85669--86015	35	10.0	33	79	9	275	44	4	9	42	1.57
85981--86050	22	3.3	21	80	7	88	40	2	8	48	1.49
86048--86081	15	2.2	16	94	5	61	32	0	0	67	0.91
86085--86129	22	2.0	23	83	12	58	24	0	8	66	1.20
87272--87332	23	2.6	22	77	12	61	19	6	0	73	1.04
87354--87396	17	2.6	17	82	17	63	13	4	0	81	0.84
87407--87438	14	2.2	15	94	5	57	12	9	0	78	0.97
91862--92010	59	2.5	59	91	0	244	26	22	12	38	1.89
93810--93851	20	2.1	20	95	0	75	40	2	19	38	1.64
94421--94450	12	2.6	12	94	5	53	56	0	0	43	0.99
96138--96191	20	2.7	20	74	5	56	35	18	7	38	1.79
96435--96480	21	2.2	21	84	0	56	23	26	13	36	1.91
96555--96661	44	2.5	42	82	14	130	43	0	1	53	1.18
96560--96676	44	2.7	42	76	18	123	41	0	2	55	1.19
97111--97152	15	2.8	15	92	0	66	0	35	9	54	1.33
104932--104970	19	2.1	19	100	0	78	25	0	25	48	1.51
107910--107956	23	2.1	22	84	11	60	36	2	2	59	1.21
108953--109023	31	2.3	31	87	2	97	25	11	26	36	1.90
109960--110007	19	2.7	17	78	12	60	47	0	0	52	1.00
110261--110372	51	2.2	51	84	6	138	16	30	28	25	1.96
114000--114086	35	2.5	34	80	12	97	56	9	6	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115005--115131	51	2.5	50	79	5	121	22	26	33	17	1.96
116671--116706	17	2.1	17	89	0	54	63	5	8	22	1.43
118500--118586	23	3.8	23	89	3	122	34	26	21	17	1.95
118487--118578	46	2.0	47	85	10	127	32	26	21	19	1.97
121157--121208	20	2.7	18	77	16	59	26	26	13	32	1.94
125418--125827	134	3.0	134	84	5	533	34	19	17	28	1.94
125734--125914	87	2.1	86	83	6	222	34	16	18	31	1.93
125633--126040	221	1.8	221	88	1	629	33	18	17	30	1.94
125806--126227	134	3.2	135	79	4	453	33	18	17	29	1.94
126924--127106	45	4.1	45	79	6	183	41	18	17	22	1.90
126919--127100	90	2.0	90	83	2	231	40	18	16	24	1.90
127088--127445	38	9.1	38	80	8	369	36	17	20	26	1.94
127083--127427	117	2.9	117	87	0	474	36	17	19	26	1.94
127083--127445	80	4.6	77	80	7	372	36	17	19	26	1.94
128337--128395	25	2.4	25	86	8	77	57	3	5	33	1.37
129303--129461	7	20.7	7	72	19	97	5	19	0	75	0.98
129303--129461	24	6.9	21	69	21	97	5	19	0	75	0.98
129304--129465	22	7.0	22	73	15	107	4	19	0	75	0.98
129298--129453	44	3.8	42	77	15	148	5	19	0	74	1.02
129304--129480	44	4.0	44	74	17	136	6	20	0	73	1.04
136451--136484	3	11.3	3	87	12	52	67	0	0	32	0.91
139616--139676	22	2.8	22	84	0	68	29	22	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140464--140505	21	2.0	20	86	4	57	21	19	33	26	1.97
140892--140937	20	2.3	20	88	0	65	43	28	13	15	1.83
144462--144508	22	2.1	22	84	7	60	19	4	4	72	1.18
159869--160546	224	3.0	224	99	0	1320	31	12	23	33	1.92
164484--164598	60	1.9	60	83	0	149	39	13	12	35	1.81
167970--168012	18	2.4	18	92	0	68	30	9	37	23	1.86
174031--174094	21	3.0	21	93	0	92	10	26	14	48	1.76
177777--178177	45	8.9	45	93	0	680	32	23	6	37	1.81
177790--178043	25	11.2	24	61	31	71	32	23	6	37	1.81
178328--178362	17	2.0	18	88	5	54	25	25	11	37	1.90

Tables:   1   2   3   4   5