Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008532.1 Hibiscus syriacus cultivar Beakdansim tig00111410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  857509

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 527 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
784741--784784
20
2.4
17
81
11
52
70
0
4
25
1.06
785774--785884
3
36.3
3
89
5
161
63
0
2
34
1.09
797021--797116
46
2.1
45
80
5
104
29
21
7
41
1.80
797032--797119
45
1.9
46
86
6
126
28
22
9
39
1.85
797092--797205
46
2.5
46
91
0
183
21
21
7
48
1.76
797458--798071
55
11.2
55
87
4
798
27
18
18
34
1.95
797483--798068
219
2.7
219
88
3
826
28
18
17
35
1.94
797458--798305
55
15.6
54
87
4
717
28
19
18
33
1.96
798059--798343
54
5.3
54
93
0
453
30
21
19
28
1.97
798668--798721
22
2.6
21
88
5
74
31
24
14
29
1.95
800405--800452
18
2.7
18
80
0
60
16
18
35
29
1.93
801410--801497
45
2.0
44
88
2
131
38
15
17
28
1.90
803568--803596
11
2.6
11
100
0
58
17
10
34
37
1.84
806180--806255
37
2.1
37
94
0
134
19
10
15
53
1.70
808469--808538
13
5.2
13
77
8
68
78
1
4
15
0.98
808476--808541
17
3.9
17
80
13
82
81
1
3
13
0.87
808481--808543
21
3.0
22
76
21
73
80
3
3
12
0.94
808469--808537
4
16.5
4
75
14
50
78
1
4
15
0.98
808485--808556
22
3.5
20
75
12
65
77
2
5
13
1.05
808620--808688
2
35.5
2
92
5
115
53
0
0
46
1.00
808718--808759
23
1.9
21
85
9
57
61
2
0
35
1.09
810513--810886
208
1.8
204
84
9
508
24
16
24
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
811766--811793
8
3.5
8
100
0
56
0
21
0
78
0.75
811781--811819
8
4.6
8
90
9
60
0
20
0
79
0.73
811766--811820
17
3.2
18
90
7
80
0
21
0
78
0.76
811789--811820
9
3.7
9
91
8
57
0
18
0
81
0.70
811861--811910
20
2.4
21
77
16
59
0
14
4
82
0.82
811867--811910
21
2.1
21
87
4
63
0
13
4
81
0.83
820954--821044
5
19.6
5
81
10
63
75
3
4
16
1.09
820953--821044
9
10.0
9
77
15
73
75
3
4
17
1.11
820869--821043
59
3.0
58
80
12
171
70
5
8
15
1.30
821008--821043
4
8.8
4
93
6
63
75
0
2
22
0.94
820998--821043
12
3.5
13
88
8
67
76
0
4
19
0.96
821125--821159
2
17.5
2
87
0
52
51
5
0
42
1.25
821129--821194
17
3.8
17
76
15
64
57
4
3
34
1.34
822438--822472
2
17.5
2
88
11
54
48
0
2
48
1.16
824408--824459
27
2.0
26
92
7
88
44
0
15
40
1.46
827187--827250
26
2.5
25
75
9
67
53
0
1
45
1.10
827644--827703
10
5.7
10
75
13
50
26
0
3
70
1.03
827698--827739
18
2.3
18
91
4
66
42
0
2
54
1.13
827691--827741
18
2.9
18
80
13
61
43
0
1
54
1.11
828125--828149
7
3.6
7
100
0
50
0
0
52
48
1.00
840915--840954
19
2.0
20
85
4
55
20
10
15
55
1.68
844641--844686
21
2.2
21
100
0
92
19
32
23
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
852656--852711
19
2.9
20
78
5
62
60
0
0
39
0.97
856190--856238
2
24.5
2
91
0
80
51
0
4
44
1.20
856830--856864
14
2.5
14
90
9
54
40
14
0
45
1.45

Tables:   1   2   3   4   5

The End!