genome.fa.s8532.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008532.1 Hibiscus syriacus cultivar Beakdansim tig00111410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  857509

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391478--391539	27	2.3	27	97	0	115	53	30	12	3	1.55
391685--391776	44	2.1	44	85	2	123	28	18	18	34	1.95
391991--392052	21	3.0	21	83	2	72	54	17	3	24	1.57
393339--393378	16	2.5	16	95	0	71	17	37	12	32	1.87
394075--394121	23	2.1	23	84	7	62	51	0	0	48	1.00
394075--394137	23	2.8	22	77	13	58	47	0	3	49	1.17
394924--395064	69	2.0	69	89	5	214	43	4	36	16	1.67
395101--395222	41	3.0	41	82	2	147	35	18	16	30	1.93
395104--395240	41	3.3	41	77	8	143	33	20	15	30	1.93
396168--396216	3	16.3	3	100	0	98	32	0	0	67	0.91
399586--399647	23	2.8	22	77	15	58	46	0	4	48	1.23
400432--400567	69	2.0	69	89	5	213	44	4	36	14	1.65
400604--400995	41	9.6	41	69	8	167	35	18	14	32	1.90
401658--401694	3	12.3	3	100	0	74	32	0	0	67	0.91
407466--407533	26	2.6	27	88	2	93	54	27	11	5	1.60
407678--407761	44	1.9	44	85	0	114	30	17	20	30	1.96
407977--408029	21	2.5	21	84	0	70	50	20	5	22	1.69
410035--410097	23	2.8	21	81	13	72	46	0	3	50	1.17
410889--411024	68	2.0	69	87	9	199	42	5	35	16	1.72
411062--411201	41	3.4	41	80	0	154	35	18	16	30	1.93
412130--412166	3	12.3	3	100	0	74	32	0	0	67	0.91
414959--415002	21	2.1	21	87	4	63	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414967--415019	21	2.5	20	77	17	54	43	0	3	52	1.19
415801--415939	68	2.0	68	91	5	228	43	5	35	15	1.69
415976--416356	41	9.4	41	69	10	165	33	18	14	32	1.92
415980--416134	81	1.9	81	81	2	186	32	18	16	32	1.93
417001--417053	3	18.3	3	92	7	92	30	0	0	69	0.88
421231--421277	23	2.1	23	84	7	62	48	0	2	48	1.13
421231--421293	23	2.8	22	77	13	58	46	0	4	49	1.23
422069--422209	70	2.0	68	88	8	205	43	4	36	15	1.69
422246--422385	41	3.4	41	80	0	163	34	20	16	29	1.94
422250--422418	82	2.0	82	80	5	189	34	18	15	30	1.92
422528--422627	40	2.5	40	81	3	103	35	20	16	29	1.94
423269--423325	3	19.3	3	96	3	107	31	0	0	68	0.90
431709--431777	27	2.6	27	92	0	111	52	30	13	4	1.59
431916--432007	44	2.1	44	85	2	123	27	19	19	33	1.96
432224--432276	21	2.5	21	84	0	70	50	20	5	22	1.69
434314--434360	23	2.1	23	84	7	62	51	0	0	48	1.00
434314--434376	23	2.8	22	77	13	58	47	0	3	49	1.17
434517--434558	21	1.9	23	85	9	61	42	2	9	45	1.49
435332--435555	41	5.6	41	78	5	215	35	17	16	30	1.92
435332--435567	79	2.9	79	79	5	226	33	18	16	31	1.93
436229--436268	3	13.3	3	100	0	80	32	0	0	67	0.91
440371--440417	23	2.1	23	84	7	62	48	0	2	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440371--440433	23	2.8	22	77	13	58	46	0	4	49	1.23
440566--440662	13	7.6	13	71	14	51	47	1	4	47	1.28
441220--441360	69	2.0	68	89	8	214	43	4	35	15	1.68
441381--441518	41	3.3	41	84	2	168	36	18	15	28	1.92
441635--441778	41	3.5	42	76	8	111	35	18	14	31	1.91
452162--452256	44	2.2	44	79	7	104	25	20	20	34	1.96
452176--452258	44	1.9	44	85	2	114	28	18	19	33	1.95
452176--452270	44	2.2	44	80	3	102	31	16	20	31	1.95
452396--452436	15	2.8	15	92	3	66	43	12	0	43	1.41
452489--452538	21	2.4	21	89	0	73	50	24	6	20	1.70
453795--453824	16	1.9	15	93	6	51	76	0	16	6	0.99
455344--455483	68	2.0	69	93	4	239	43	5	35	15	1.70
455520--455614	41	2.3	41	88	0	145	40	20	14	25	1.90
461697--461734	20	1.9	20	89	10	60	28	5	13	52	1.61
464342--464417	31	2.4	31	77	2	80	15	26	30	27	1.96
467938--467983	21	2.2	21	84	0	56	34	17	13	34	1.88
477905--477937	15	2.2	15	100	0	66	57	18	6	18	1.60
478002--478082	41	2.0	41	85	4	110	33	16	16	34	1.91
478426--478475	21	2.4	21	82	0	64	48	24	6	22	1.73
480352--480403	22	2.4	22	83	6	61	55	1	0	42	1.10
480589--480645	26	2.2	26	81	12	64	45	1	7	45	1.40
480629--480666	17	2.3	16	90	4	58	39	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481220--481359	68	2.0	69	94	4	248	43	5	35	15	1.71
481400--481480	41	2.0	41	85	0	108	38	18	18	24	1.93
481634--481772	41	3.4	42	79	6	135	33	17	15	32	1.92
485242--485287	21	2.2	21	84	0	56	34	17	15	32	1.91
486998--487039	20	2.0	21	95	4	77	28	16	7	47	1.73
490760--490828	27	2.6	27	95	0	120	52	31	13	2	1.55
490967--491058	44	2.1	44	83	2	114	27	21	18	32	1.97
491273--491325	21	2.5	21	84	0	70	50	20	3	24	1.64
493367--493413	23	2.1	23	84	7	62	51	0	0	48	1.00
493367--493429	23	2.8	22	77	13	58	47	0	1	50	1.10
494214--494354	69	2.0	69	89	8	216	43	4	35	15	1.68
494391--494782	41	9.6	41	70	11	162	34	17	15	32	1.91
495459--495507	3	16.3	3	100	0	98	32	0	0	67	0.91
496919--498389	734	2.0	736	96	0	2714	35	14	19	30	1.91
500452--500584	68	2.0	67	98	1	257	42	5	36	15	1.69
500627--500721	41	2.3	41	87	0	136	41	20	13	25	1.89
504556--504677	31	3.9	31	70	10	88	19	27	26	26	1.99
506810--506847	20	1.9	20	89	10	60	28	5	13	52	1.61
510422--510529	41	2.6	42	80	8	125	35	15	16	32	1.91
513496--513541	21	2.2	21	84	0	56	34	17	13	34	1.88
523593--523684	44	2.1	44	83	2	114	27	18	19	34	1.95
523899--523948	21	2.4	21	89	0	73	50	24	4	22	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525958--526014	26	2.2	26	84	12	73	43	1	8	45	1.45
525998--526035	17	2.3	16	90	4	58	39	0	5	55	1.23
526612--526742	69	1.9	67	93	3	226	45	4	32	17	1.69
526790--526884	41	2.3	41	85	3	129	38	17	15	27	1.91
526805--526899	41	2.3	41	87	0	127	34	16	16	31	1.92
527028--527126	41	2.4	41	80	6	112	35	17	16	31	1.92
527840--527869	3	10.3	3	92	7	53	30	0	0	70	0.88
531106--531130	3	8.3	3	100	0	50	32	0	0	68	0.90
536712--536795	44	1.9	44	87	0	123	30	17	20	30	1.96
537011--537063	21	2.5	21	84	0	70	50	20	5	22	1.69
538853--538904	22	2.4	22	83	6	61	55	1	0	42	1.10
539898--540037	68	2.0	69	86	4	194	43	5	33	17	1.72
540074--540213	41	3.4	40	79	3	147	35	19	17	28	1.94
540311--540466	41	3.8	42	77	5	126	31	18	16	33	1.93
549852--549901	21	2.4	21	89	0	73	50	24	6	20	1.70
551957--552003	23	2.1	23	84	7	62	48	0	2	48	1.13
551957--552019	23	2.8	22	77	13	58	46	0	4	49	1.23
552809--552944	68	2.0	68	90	4	213	43	6	34	15	1.73
552985--553124	41	3.4	41	80	3	147	36	20	13	29	1.91
552966--553348	41	9.3	40	72	13	138	32	18	15	32	1.93
554008--554046	3	13.3	3	89	5	62	33	0	0	66	0.92
561343--561400	21	2.8	21	91	0	89	37	12	13	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561343--561409	21	3.2	21	87	4	73	35	14	13	35	1.86
563886--564116	29	7.9	29	82	5	225	37	6	20	35	1.78
563932--564106	60	3.0	60	78	5	167	38	5	20	35	1.77
564998--565121	63	2.0	63	80	6	144	16	27	29	26	1.97
565138--565191	26	2.1	26	89	0	81	27	7	16	48	1.73
573145--573179	18	1.9	18	88	0	52	54	0	17	28	1.43
576284--576338	22	2.5	22	90	0	92	20	47	23	9	1.78
576309--576343	17	2.1	17	88	0	52	20	45	25	8	1.79
576338--576557	29	7.6	29	85	2	271	38	6	20	34	1.80
581970--582017	15	3.2	15	93	0	87	58	18	4	18	1.55

Tables:   1   2   3   4   5