genome.fa.s8532.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008532.1 Hibiscus syriacus cultivar Beakdansim tig00111410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  857509

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582166--582248	43	1.9	44	82	2	105	31	15	19	33	1.93
582463--582512	21	2.4	21	89	0	73	50	24	6	20	1.70
584340--584385	23	2.1	22	84	11	60	50	0	0	50	1.00
584340--584401	23	2.8	22	77	15	58	46	0	3	50	1.17
584550--584656	25	4.2	25	75	11	69	46	0	3	49	1.19
584603--584658	23	2.3	23	84	6	67	48	0	1	50	1.11
585188--585327	68	2.0	69	87	4	203	45	6	34	14	1.70
586228--586284	3	19.3	3	96	3	107	31	0	0	68	0.90
588824--588869	21	2.2	21	84	0	56	34	17	13	34	1.88
601263--601444	85	2.1	87	84	5	244	30	1	12	56	1.46
603600--603639	20	2.0	20	85	0	53	35	25	20	20	1.96
613504--613528	12	2.1	12	100	0	50	24	20	24	32	1.98
614215--614263	18	2.6	19	77	6	55	46	8	2	42	1.45
614935--615239	137	2.2	139	88	2	436	43	12	12	31	1.80
615567--615614	14	3.4	14	77	13	53	68	4	4	22	1.24
616066--616105	19	2.1	20	86	9	57	65	2	7	25	1.32
616060--616106	18	2.6	19	78	18	55	63	2	8	25	1.34
620961--620995	18	1.9	18	88	0	52	28	17	0	54	1.43
622096--622133	7	5.1	7	87	12	58	26	26	34	13	1.93
622096--622167	8	9.4	8	76	18	73	22	25	37	15	1.93
622096--622133	15	2.5	15	100	0	76	26	26	34	13	1.93
622123--622185	13	4.5	13	78	18	72	17	22	44	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622134--622168	18	1.9	18	94	0	61	17	22	42	17	1.88
622108--622203	31	3.2	30	84	7	115	18	20	43	16	1.88
622162--622207	18	2.6	18	96	0	83	13	15	52	19	1.75
625964--625998	18	1.9	18	88	0	52	28	17	0	54	1.43
627099--627136	7	5.1	7	87	12	58	26	26	34	13	1.93
627099--627170	8	9.4	8	76	18	73	22	25	37	15	1.93
627099--627136	15	2.5	15	100	0	76	26	26	34	13	1.93
627126--627188	13	4.5	13	78	18	72	17	22	44	15	1.86
627137--627171	18	1.9	18	94	0	61	17	22	42	17	1.88
627111--627206	31	3.2	30	84	7	115	18	20	43	16	1.88
627165--627210	18	2.6	18	96	0	83	13	15	52	19	1.75
628033--628094	26	2.4	26	83	5	72	37	12	8	41	1.73
629104--629129	2	13.0	2	100	0	52	50	0	0	50	1.00
629221--629423	37	5.8	36	72	20	130	44	2	6	46	1.44
629220--629343	66	1.9	66	81	9	155	44	3	7	45	1.47
629278--629375	31	3.2	30	90	7	144	43	2	6	47	1.39
629396--629440	24	1.9	23	86	4	63	40	0	2	57	1.11
630721--630758	20	1.9	20	88	0	58	18	5	0	76	0.97
630742--630781	14	2.9	13	82	10	53	25	2	0	72	0.97
630718--630781	28	2.4	27	82	7	76	23	3	0	73	0.97
630718--630792	19	3.8	19	69	11	62	22	4	0	73	1.00
630770--630812	21	2.2	19	83	8	50	11	9	0	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631350--631505	54	2.9	54	92	0	240	26	9	12	51	1.70
635351--635382	2	16.5	2	93	6	57	50	0	0	50	1.00
637944--637989	19	2.3	20	88	3	67	34	13	4	47	1.62
646211--646406	99	2.0	99	97	0	374	41	20	4	34	1.71
647853--647968	59	2.0	59	96	0	214	37	15	16	30	1.90
650839--650933	42	2.3	43	81	5	106	34	17	16	30	1.93
651769--651958	83	2.3	83	85	2	258	33	16	21	28	1.95
655219--655262	20	2.4	17	81	11	52	70	0	2	27	0.99
655889--656101	107	2.0	107	91	1	347	27	27	12	32	1.92
656979--657337	45	8.0	45	89	1	531	32	21	24	22	1.98
659436--659608	75	2.3	75	81	9	201	32	17	14	35	1.90
664990--665033	20	2.4	17	81	11	52	70	0	2	27	0.99
667385--667430	21	2.2	21	84	0	56	34	17	13	34	1.88
678800--678855	9	6.0	9	74	14	51	3	14	1	80	0.93
678803--678856	16	3.3	16	75	12	56	3	12	1	81	0.91
679819--679977	85	1.9	87	87	2	241	30	1	11	55	1.44
682156--682203	21	2.3	21	81	0	60	35	20	27	16	1.94
692968--693016	18	2.6	19	77	6	55	46	8	2	42	1.45
693561--693991	137	3.1	137	82	5	384	43	12	13	30	1.81
693688--693993	137	2.2	139	87	4	422	43	12	11	32	1.79
694829--694868	19	2.1	20	86	9	57	65	2	7	25	1.32
694823--694869	18	2.6	19	78	18	55	63	2	8	25	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696732--696764	15	2.2	15	94	0	57	15	6	3	75	1.11
702280--702328	24	2.0	24	100	0	98	18	16	16	48	1.81
703418--704673	622	2.0	623	92	1	2104	31	18	14	34	1.91
707926--708061	13	10.5	12	72	21	80	5	19	1	74	1.08
707926--708004	36	2.1	39	84	11	103	2	21	1	74	1.01
707933--708063	18	6.7	19	72	17	67	5	17	1	75	1.06
707918--708067	20	7.4	20	69	18	82	4	19	1	74	1.06
711477--711521	21	2.2	20	84	15	56	60	6	13	20	1.55
711487--711529	20	2.0	22	86	8	63	53	9	16	20	1.70
712254--712303	14	3.6	14	76	15	50	70	2	4	24	1.15
714911--715020	40	2.8	40	98	0	211	33	30	16	19	1.94
715842--715900	31	1.9	31	86	10	86	35	22	8	33	1.84
718730--718773	16	2.9	15	80	6	52	6	9	0	84	0.79
718751--718775	10	2.5	10	100	0	50	8	0	0	92	0.40
722929--722993	16	4.1	16	73	11	53	63	0	21	15	1.31
723185--723218	15	2.3	15	89	0	50	0	11	2	85	0.71
730406--730454	2	24.5	2	100	0	98	51	0	0	48	1.00
730480--730645	85	2.0	85	81	4	201	31	18	19	31	1.95
730623--730684	13	4.8	13	75	0	61	35	16	17	30	1.92
730623--730686	26	2.5	26	84	0	83	34	15	17	32	1.91
733978--734045	30	2.3	31	85	7	88	29	17	11	41	1.85
734896--734985	20	4.4	20	79	8	101	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735026--735102	40	1.9	40	81	5	93	32	18	10	38	1.84
735041--735102	20	3.1	20	77	9	72	30	19	11	38	1.87
736033--736098	24	2.8	24	97	0	123	19	22	21	36	1.95
738378--738413	18	2.0	18	88	0	54	55	22	2	19	1.56
738712--738747	16	2.2	16	90	0	54	66	13	0	19	1.24
740090--740208	63	1.9	63	81	6	143	30	34	13	21	1.92
740164--740210	21	2.2	21	92	0	76	31	34	14	19	1.92
740328--740425	42	2.3	42	91	0	160	18	18	33	29	1.95
741921--741963	20	2.2	20	86	0	59	51	18	16	13	1.77
742354--742399	22	2.1	22	95	0	83	17	15	47	19	1.82
742550--742616	20	3.4	20	84	8	84	22	13	20	43	1.87
742586--742651	20	3.3	20	91	0	96	22	16	22	37	1.93
744267--744306	21	1.9	21	94	0	71	42	15	5	37	1.68
745309--745370	26	2.4	26	83	5	72	37	12	8	41	1.73
746377--746409	2	17.0	2	93	6	59	51	0	0	48	1.00
746496--746623	60	2.2	57	81	9	141	42	3	7	46	1.48
746517--746645	31	4.2	30	80	18	142	43	3	6	46	1.46
746608--746685	36	2.1	39	88	9	117	46	2	3	47	1.34
746608--746685	37	2.1	39	88	9	117	46	2	3	47	1.34
746516--746690	31	5.4	32	72	22	102	43	2	6	47	1.43
747818--747882	27	2.3	29	81	7	80	27	1	3	67	1.14
747922--747974	13	4.0	13	78	9	54	22	3	0	73	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747891--747999	46	2.3	46	79	14	109	21	8	1	68	1.25
748559--748706	55	2.7	54	92	1	233	25	8	12	52	1.68
755177--755222	19	2.3	20	88	3	67	34	13	4	47	1.62
762733--762830	45	2.2	45	98	0	187	20	10	21	47	1.79
765106--765221	59	2.0	59	96	0	214	37	15	16	30	1.90
768882--769071	83	2.3	83	82	6	226	34	16	20	28	1.94
772324--772367	20	2.4	17	81	11	52	70	0	2	27	0.99
772996--773209	107	2.0	107	92	1	358	26	27	12	33	1.93
774159--774517	45	8.0	45	90	1	549	32	21	24	22	1.98
776614--776786	75	2.3	75	83	5	217	31	19	14	34	1.92

Tables:   1   2   3   4   5