genome.fa.s8591.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008591.1 Hibiscus syriacus cultivar Beakdansim tig00111540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1730314

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168787--169640	112	7.6	112	88	4	1134	29	18	14	37	1.90
170077--170131	22	2.5	22	90	0	92	38	14	12	34	1.84
172677--173318	83	7.7	83	93	2	993	37	21	13	27	1.91
175438--175478	7	6.1	7	85	5	50	0	14	0	85	0.60
177420--177475	27	2.1	27	86	0	76	60	8	10	19	1.55
177514--177566	14	3.7	14	87	2	70	54	9	13	22	1.67
185278--185339	16	3.9	16	84	0	79	24	19	12	43	1.86
185274--185339	32	2.1	32	88	0	96	24	21	13	40	1.89
185507--185533	13	2.1	13	100	0	54	55	0	0	44	0.99
185853--185887	15	2.5	15	90	9	56	40	0	5	54	1.24
186342--186416	7	10.7	7	77	0	60	21	0	30	48	1.51
186342--186420	21	3.8	21	76	15	74	20	0	29	50	1.48
186473--186589	2	62.0	2	66	23	58	48	4	1	45	1.32
186477--186589	53	2.3	51	82	11	128	48	4	1	45	1.33
186820--186870	17	3.0	17	91	5	77	25	29	0	45	1.54
186848--186927	26	3.0	26	89	7	108	27	27	0	45	1.54
187175--187206	2	16.5	2	93	6	57	46	0	0	53	1.00
192619--192656	20	2.0	20	89	5	60	50	0	0	50	1.00
192567--192701	45	3.0	44	73	15	123	48	1	0	48	1.15
192722--192767	18	2.6	19	76	13	53	54	0	2	43	1.12
198512--198584	23	3.2	23	90	0	110	38	20	5	35	1.76
198950--198999	23	2.2	23	92	0	82	38	22	6	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198535--200681	416	5.2	415	97	0	3992	39	10	7	42	1.69
199366--199415	23	2.2	23	88	0	73	40	20	6	34	1.77
199782--199831	23	2.2	23	92	0	82	38	22	6	34	1.78
200610--200657	23	2.1	23	96	0	87	37	20	6	35	1.78
203409--204170	183	4.2	183	96	0	1380	33	16	14	34	1.90
205361--205447	3	29.0	3	78	0	84	22	33	6	36	1.81
205361--205464	12	8.7	12	84	0	109	22	32	7	37	1.82
205386--205464	36	2.2	36	95	0	140	20	32	7	39	1.81
205401--205464	18	3.6	18	82	0	92	20	32	7	39	1.81
205365--205464	6	16.7	6	80	0	83	21	33	8	38	1.82
206923--208092	200	5.9	200	95	2	2091	30	18	15	35	1.91
206923--208092	396	3.0	400	95	2	2084	30	18	15	35	1.91
208191--208251	19	3.3	18	88	2	59	52	11	1	34	1.47
208203--208251	19	2.6	19	96	0	89	55	10	2	32	1.45
210032--210097	33	2.0	33	87	0	96	22	46	0	30	1.52
210131--210174	21	2.1	21	91	0	70	15	31	11	40	1.83
212577--212637	20	3.1	19	80	13	70	19	14	11	54	1.71
212364--212834	180	2.6	182	89	1	696	27	16	13	42	1.86
213674--213722	2	24.5	2	100	0	98	48	0	0	51	1.00
219248--219272	12	2.1	12	100	0	50	44	0	24	32	1.54
221135--221167	2	17.0	2	93	6	59	48	0	0	51	1.00
221643--221693	17	3.1	16	77	8	57	68	0	3	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223160--223207	3	17.0	3	87	12	75	66	0	0	33	0.92
223783--223824	22	1.9	22	90	0	66	23	38	23	14	1.92
229633--229717	22	3.9	22	69	14	59	24	35	23	16	1.95
233254--233374	31	3.9	31	72	9	93	28	15	21	34	1.94
233255--233354	31	3.2	30	76	12	94	31	15	19	35	1.92
239691--239730	16	2.4	17	91	8	64	32	7	22	37	1.82
243787--245457	835	2.0	834	98	0	3227	28	17	18	35	1.94
246965--247058	10	9.8	9	72	17	64	17	26	25	30	1.97
246986--247064	10	8.3	9	77	14	70	15	29	27	27	1.96
247059--247113	22	2.5	22	93	0	92	20	49	20	10	1.78
247082--247120	17	2.3	17	100	0	78	17	46	23	12	1.83
247110--247155	7	6.4	7	80	14	58	15	30	26	28	1.96
253558--253645	10	8.9	10	74	6	63	17	25	26	31	1.97
253558--253596	21	1.9	21	89	5	62	17	25	23	33	1.96
253579--253658	10	8.3	10	73	19	64	15	27	28	28	1.96
253559--253658	30	3.4	29	81	10	114	16	27	27	30	1.96
253661--253709	12	4.2	12	79	10	66	18	44	24	12	1.84
253655--253702	22	2.2	22	92	0	78	18	47	22	10	1.79
253699--253750	7	7.4	7	95	0	95	15	26	28	28	1.96
258418--258453	18	2.0	18	88	0	54	47	13	25	13	1.80
266734--266828	28	3.2	29	77	12	95	43	3	1	52	1.24
277671--278090	205	2.0	206	89	2	648	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277765--278108	41	8.3	42	70	12	176	31	17	23	27	1.97
277970--278132	42	3.9	42	82	7	172	30	17	25	25	1.97
285261--285312	21	2.5	21	77	0	59	42	17	36	3	1.67
285296--285343	21	2.3	21	81	0	60	43	20	35	0	1.52
285755--285937	43	4.3	43	79	5	163	36	24	16	22	1.94
292023--292087	2	33.0	2	96	3	123	49	0	0	50	1.00
294480--294567	35	2.5	36	94	5	155	42	0	0	57	0.98
295653--295680	3	9.3	3	100	0	56	32	0	0	67	0.91
299515--299542	3	9.3	3	100	0	56	67	32	0	0	0.91
304818--304859	17	2.5	17	84	3	59	66	2	4	26	1.23
305855--306901	105	10.0	105	91	2	1594	22	18	26	33	1.96
307645--307785	67	2.1	68	88	6	216	36	10	19	33	1.87
307678--307950	36	7.9	35	70	17	196	36	13	21	28	1.91
307666--307803	67	2.1	67	94	0	240	36	13	19	30	1.90
307678--307933	103	2.5	101	82	4	309	36	12	21	28	1.91
308394--308429	18	2.0	18	88	0	54	41	30	8	19	1.81
308845--308915	22	3.2	22	87	0	106	29	12	22	35	1.91
309573--309643	8	9.1	7	77	17	61	0	15	7	77	0.97
309567--309622	16	3.4	17	78	4	53	0	16	8	75	1.05
309598--309649	16	3.2	16	79	12	54	0	13	7	78	0.94
313294--313330	16	2.2	17	90	4	58	64	2	5	27	1.28
315735--315816	2	41.0	2	100	0	164	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319809--319870	20	3.1	20	78	0	61	20	20	27	30	1.98
319837--319880	20	2.2	20	87	0	61	25	25	22	27	2.00
321047--321103	22	2.7	21	83	8	71	40	1	0	57	1.09
328821--328869	24	2.1	23	88	3	71	55	0	0	44	0.99
328842--328874	15	2.2	15	89	10	50	57	0	0	42	0.98
332187--332241	20	2.8	20	94	0	92	45	14	20	20	1.85
332046--332420	202	1.9	202	93	1	644	40	13	17	28	1.87
332380--332425	20	2.3	19	78	10	56	54	10	15	19	1.70
334566--334613	15	3.2	15	96	0	87	22	6	58	12	1.57
334696--334739	21	2.1	21	91	0	70	40	11	31	15	1.83
334773--334838	33	2.0	33	90	0	105	31	0	45	22	1.53
336921--337486	180	3.0	180	86	8	776	36	15	17	31	1.91
337095--337839	201	3.7	201	90	1	1181	37	14	16	31	1.89
337095--337839	401	1.9	402	91	0	1224	37	14	16	31	1.89
340648--341101	251	1.8	251	90	0	730	37	13	16	32	1.87
342753--342799	23	2.0	23	100	0	94	48	29	8	12	1.71
343827--344532	200	3.5	196	81	7	703	39	13	15	31	1.86
344547--344711	86	1.9	87	89	1	260	35	11	10	42	1.76
344633--344677	23	2.0	23	86	0	63	42	20	6	31	1.77
352618--352660	21	2.0	21	95	0	77	32	13	30	23	1.93
379309--379356	3	16.3	3	95	4	89	31	0	0	68	0.90
383566--383605	21	2.0	20	90	5	62	17	17	15	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384549--384582	6	5.8	6	93	6	61	85	14	0	0	0.60
386144--386178	4	8.8	4	93	0	61	48	25	2	22	1.64
386489--386630	35	3.9	36	79	7	146	33	16	14	35	1.90
386706--386749	21	2.1	21	91	0	70	31	18	15	34	1.92
386725--386822	32	2.9	33	83	7	126	32	20	10	36	1.86
387062--387120	29	2.0	29	83	6	75	28	10	13	47	1.75
387083--387236	59	2.6	60	88	6	226	29	11	14	43	1.81
387208--387276	29	2.4	28	83	9	86	34	10	14	40	1.80
387225--387391	67	2.6	64	82	8	187	28	14	13	43	1.83
387357--387449	28	3.2	28	76	8	80	26	15	10	47	1.78

Tables:   1   2   3   4   5   6   7   8