Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008591.1 Hibiscus syriacus cultivar Beakdansim tig00111540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1730314

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 896 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1540570--1540824
131
1.9
131
85
4
345
37
17
18
26
1.93
1540911--1540935
2
12.5
2
100
0
50
48
0
0
52
1.00
1546398--1546730
166
2.0
166
89
0
513
23
15
27
33
1.95
1552069--1552116
20
2.3
20
79
10
53
66
0
6
27
1.15
1561292--1561329
16
2.5
15
84
12
51
31
2
0
65
1.06
1562072--1562125
24
2.2
24
90
0
81
18
18
22
40
1.91
1564568--1564622
20
2.8
20
80
0
65
34
20
20
25
1.96
1567404--1567521
47
2.6
44
83
7
146
39
8
21
30
1.83
1568374--1568491
21
5.6
21
81
3
130
25
19
33
21
1.97
1568374--1568496
42
2.9
42
85
0
156
25
19
34
20
1.96
1568371--1568502
63
2.1
63
81
4
151
24
19
35
20
1.96
1570646--1570688
20
2.2
20
82
0
50
13
16
20
48
1.80
1571019--1571069
22
2.3
22
93
0
84
19
11
43
25
1.85
1571192--1571267
20
3.8
20
91
0
125
15
7
23
52
1.69
1571287--1571401
41
2.8
41
88
1
151
28
18
20
33
1.96
1571264--1571392
61
2.1
61
84
2
161
27
19
19
34
1.96
1571264--1571392
20
6.3
20
85
2
159
27
19
19
34
1.96
1574030--1574096
23
3.0
24
75
18
74
17
10
14
56
1.66
1576515--1576591
38
2.0
38
94
0
136
29
11
11
46
1.76
1586931--1586998
34
2.0
33
91
2
109
29
22
17
30
1.97
1593339--1593371
2
16.5
2
93
0
57
51
3
0
45
1.16
1596343--1596746
132
3.1
129
75
9
386
30
18
17
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1607302--1607340
16
2.4
16
80
12
53
66
0
0
33
0.92
1609069--1609119
5
10.4
5
83
12
70
15
0
1
82
0.76
1610656--1610752
44
2.1
47
86
7
137
29
10
19
40
1.85
1620413--1620533
27
4.3
29
74
15
89
71
1
20
5
1.15
1620499--1620547
8
5.7
9
77
22
52
69
2
22
6
1.21
1620520--1620553
14
2.3
15
90
5
52
73
0
20
5
1.04
1621633--1622326
51
13.4
51
92
2
868
30
16
26
27
1.96
1624008--1624058
5
10.4
5
79
12
61
17
0
1
80
0.81
1644748--1644793
17
2.8
17
77
9
51
47
2
0
50
1.13
1648872--1648923
24
2.1
26
89
7
81
15
13
17
53
1.72
1649177--1649241
10
5.9
10
80
19
76
9
9
20
61
1.53
1649177--1649242
23
2.9
23
100
0
132
9
9
19
62
1.52
1649182--1649244
13
5.3
13
71
21
66
11
7
19
61
1.53
1649259--1649306
21
2.3
21
92
0
78
39
14
10
35
1.80
1652787--1652833
20
2.2
22
77
11
53
46
2
0
51
1.13
1653189--1653290
31
3.4
29
79
11
91
37
14
9
38
1.80
1659502--1660911
396
3.5
395
76
9
948
26
23
16
32
1.96
1664065--1664389
161
2.0
162
96
3
602
16
11
35
36
1.85
1676229--1676274
19
2.4
19
96
0
83
30
13
19
36
1.90
1676437--1676466
9
3.4
9
95
4
53
73
0
16
10
1.09
1676506--1676542
7
4.9
8
80
12
51
78
0
13
8
0.96
1676418--1676542
15
7.6
16
73
21
73
71
0
20
8
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1676506--1676554
15
3.3
15
91
2
73
77
0
14
8
0.98
1677883--1678240
55
6.7
54
88
4
399
28
16
26
28
1.97
1677881--1678240
110
3.3
108
86
6
450
28
16
26
29
1.97
1677933--1678313
166
2.3
164
81
6
425
28
16
25
29
1.97
1677883--1678290
55
7.6
54
87
5
354
28
16
26
28
1.97
1685081--1685115
16
2.2
16
100
0
70
45
17
31
5
1.71
1707968--1707994
3
9.0
3
100
0
54
66
0
0
33
0.92
1711683--1711716
16
2.1
17
88
5
52
58
0
5
35
1.22
1716763--1716807
18
2.5
17
82
10
54
66
0
4
28
1.11
1722923--1722984
31
2.0
32
93
6
110
45
9
3
41
1.53
1722976--1723004
2
14.5
2
100
0
58
51
0
0
48
1.00
1725942--1726023
38
2.1
39
82
6
96
43
2
4
48
1.37

Tables:   1   2   3   4   5   6   7   8

The End!