genome.fa.s8591.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008591.1 Hibiscus syriacus cultivar Beakdansim tig00111540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1730314

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606537--606596	29	2.0	31	90	6	97	41	16	6	35	1.75
609704--609745	21	2.0	21	90	0	66	26	26	21	26	1.99
609850--609915	19	3.5	19	89	4	89	36	13	10	39	1.80
609980--610039	29	2.0	31	90	6	97	41	16	6	35	1.75
610886--610981	38	2.5	38	89	0	147	23	28	21	26	1.99
616266--616305	13	3.2	12	85	7	53	15	40	22	22	1.91
618762--618849	24	3.7	24	75	6	88	20	12	18	48	1.80
619016--619051	2	18.5	2	94	5	65	47	0	0	52	1.00
619016--619049	17	2.0	17	100	0	68	47	0	0	52	1.00
619051--619091	2	20.5	2	100	0	82	0	0	48	51	1.00
620926--620966	18	2.3	18	91	0	64	19	48	19	12	1.80
620943--620972	13	2.3	13	94	0	51	16	43	23	16	1.87
623450--623506	24	2.4	24	78	0	69	22	17	15	43	1.87
623464--623558	24	4.0	24	74	10	68	23	11	14	50	1.75
630047--630539	244	2.0	244	97	2	909	24	25	17	32	1.97
632896--632941	2	23.0	2	100	0	92	50	0	0	50	1.00
642708--642742	17	2.1	17	100	0	70	34	5	17	42	1.73
653412--653568	82	1.9	81	90	3	253	40	8	7	42	1.65
655825--655887	23	2.7	23	92	0	99	39	15	15	28	1.89
655877--655942	27	2.4	27	97	0	123	36	16	18	28	1.93
655996--656033	16	2.5	15	91	4	58	42	15	0	42	1.47
657645--657685	21	1.9	22	90	5	66	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657837--657946	24	4.2	25	72	23	86	42	4	0	52	1.21
657843--657928	25	3.2	27	79	17	92	40	3	0	55	1.17
657852--657929	26	3.2	23	80	20	79	41	3	0	55	1.18
657854--657958	25	4.2	25	77	14	92	41	4	0	53	1.22
657854--657958	54	2.0	52	83	7	131	41	4	0	53	1.22
658933--658959	2	13.5	2	100	0	54	48	0	0	51	1.00
670030--670067	17	2.3	17	95	4	69	26	0	0	73	0.83
673188--673282	33	2.9	33	98	0	181	23	14	23	38	1.91
674621--674649	15	1.9	15	100	0	58	55	6	6	31	1.53
674974--675026	23	2.3	22	75	9	52	60	3	1	33	1.26
676510--676560	15	3.4	15	91	0	84	11	68	13	5	1.37
678293--678368	14	5.6	14	73	13	54	47	27	0	25	1.52
678463--678492	14	2.1	14	93	0	51	43	0	6	50	1.28
681566--681597	3	11.0	3	93	6	57	34	0	0	65	0.93
681740--681921	87	2.1	88	96	2	341	40	5	9	44	1.61
688967--689043	36	2.1	36	87	0	109	29	15	9	45	1.77
697756--697812	2	29.0	2	96	3	107	49	0	0	50	1.00
700434--700486	20	2.7	20	74	11	63	28	32	15	24	1.95
700475--700565	20	4.6	20	95	0	164	34	24	20	20	1.97
700555--700622	20	3.5	20	83	4	102	36	26	17	19	1.94
700495--700621	40	3.2	39	80	12	118	36	23	18	21	1.95
700567--700640	19	3.8	19	80	3	76	40	22	13	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700555--700639	39	2.2	40	87	6	129	37	24	15	22	1.93
700596--700785	95	2.0	95	93	0	326	33	19	19	27	1.96
701502--701671	85	2.0	84	94	4	297	28	4	20	46	1.71
701585--701814	122	1.9	121	99	0	451	26	7	18	47	1.76
702328--702453	39	3.2	39	94	0	225	46	19	15	19	1.84
704275--704326	21	2.5	21	81	6	61	21	25	34	19	1.96
704294--704386	21	4.4	21	76	12	93	21	21	34	22	1.97
704294--704392	42	2.4	42	83	6	137	22	20	34	23	1.97
706985--707144	40	4.0	40	81	10	193	21	16	21	40	1.91
706985--707135	60	2.5	59	79	10	173	20	16	21	41	1.91
706985--707135	20	7.6	20	77	10	148	20	16	21	41	1.91
707138--707184	20	2.3	20	78	7	51	27	10	31	29	1.90
717438--717487	25	2.0	25	96	0	91	20	22	32	26	1.98
718569--718595	13	2.1	13	100	0	54	37	14	25	22	1.93
719077--719232	80	2.0	80	96	0	285	33	14	8	42	1.77
721059--721091	17	1.9	17	93	0	57	21	12	12	54	1.69
734617--734649	2	16.5	2	100	0	66	48	0	0	51	1.00
736760--736834	10	7.7	10	69	21	61	57	21	12	9	1.62
736764--736828	16	4.1	16	95	0	121	56	23	12	7	1.61
737865--737926	24	2.6	24	92	0	106	53	24	12	9	1.69
737872--737927	14	4.3	14	78	17	75	51	25	14	8	1.70
742986--743051	32	2.1	32	100	0	132	30	12	12	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747027--747063	16	2.2	17	86	13	51	16	8	2	72	1.19
747026--747065	17	2.3	18	80	20	50	17	7	2	72	1.19
748624--748658	18	1.9	18	100	0	70	17	5	25	51	1.67
749250--749337	25	3.3	26	71	16	74	43	4	1	51	1.29
749263--749340	25	3.0	26	76	10	81	42	5	1	51	1.32
750350--750415	12	5.4	12	73	14	55	39	0	1	59	1.07
750460--750543	22	3.6	23	77	22	79	28	5	0	65	1.16
750520--750554	9	3.5	10	88	11	54	37	0	0	62	0.95
752623--752651	2	14.5	2	100	0	58	51	0	0	48	1.00
754155--754207	14	4.1	14	76	18	60	13	11	16	58	1.63
754142--754206	24	2.6	24	90	4	94	15	12	15	56	1.67
754458--754497	14	2.9	14	85	3	55	2	12	27	57	1.48
754566--754598	16	2.1	16	94	0	57	6	15	24	54	1.63
761747--761804	28	2.1	28	100	0	116	44	6	13	34	1.71
764016--764085	37	1.9	36	85	8	97	48	4	0	47	1.21
766238--766279	21	2.0	21	100	0	84	14	14	42	28	1.84
768055--768081	9	3.0	9	100	0	54	22	0	0	77	0.76
768782--768832	26	2.0	27	84	7	70	56	1	0	41	1.10
771119--771167	16	2.9	17	74	20	50	61	0	2	36	1.08
771125--771174	19	2.5	21	78	15	61	60	0	2	38	1.09
773522--773548	7	3.9	7	100	0	54	29	25	14	29	1.95
774966--774997	12	2.7	12	100	0	64	34	28	31	6	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778585--778621	20	1.9	20	88	5	58	67	18	10	2	1.32
779917--780028	58	1.9	58	94	0	197	39	17	13	29	1.88
781470--781662	61	3.1	61	63	11	156	25	10	8	55	1.61
781400--781669	126	2.1	127	97	0	515	25	11	8	54	1.64
781426--781625	65	3.1	64	63	11	167	26	9	8	56	1.58
783275--783323	26	2.0	26	84	8	66	42	4	4	48	1.40
802919--803171	35	7.0	36	75	13	186	42	3	6	47	1.45
802919--803172	37	7.0	36	76	16	206	42	3	6	47	1.47
804110--804324	106	2.0	108	98	1	416	24	19	26	30	1.98
804497--804530	13	2.6	13	90	0	59	17	0	0	82	0.67
808822--810437	94	17.2	94	93	3	2754	33	24	18	23	1.96
811161--811413	36	7.0	37	81	10	242	43	4	6	45	1.50
813398--813470	2	36.5	2	100	0	146	49	0	50	0	1.00
820517--820567	23	2.2	24	82	10	61	62	7	15	13	1.52
829905--829990	44	2.0	44	95	0	154	25	15	17	41	1.88
831710--831766	24	2.5	24	82	5	64	28	15	15	40	1.88
840347--840379	12	2.8	12	95	0	57	0	45	0	54	0.99
850071--850128	12	4.4	13	83	12	57	10	13	0	75	1.04
850365--850462	30	3.0	32	85	11	128	41	20	13	24	1.88
851459--851548	30	3.0	30	100	0	180	23	10	23	43	1.83
856125--856194	34	2.1	34	100	0	140	44	5	5	44	1.51
867759--867795	4	9.2	4	87	0	56	24	5	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868909--868979	24	3.0	24	89	0	106	33	23	28	14	1.94
868969--869030	23	2.7	23	79	0	70	35	27	19	17	1.94
871835--871868	17	2.0	17	100	0	68	58	11	17	11	1.62
872648--872733	20	4.4	20	98	1	158	48	0	0	51	1.00
872706--872874	91	1.8	92	89	2	268	53	9	4	33	1.52
872962--873014	27	2.0	27	85	7	72	28	1	0	69	0.99
877641--877720	9	9.8	8	74	17	58	38	0	0	61	0.96
877637--877721	32	2.6	34	90	9	149	37	0	0	62	0.96
878110--878152	22	2.0	22	95	0	77	39	2	6	51	1.42
878783--878837	24	2.3	24	83	0	74	43	16	20	20	1.88

Tables:   1   2   3   4   5   6   7   8