genome.fa.s8591.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008591.1 Hibiscus syriacus cultivar Beakdansim tig00111540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1730314

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387433--387579	66	2.2	66	86	4	190	31	14	12	40	1.84
387452--387600	66	2.3	66	89	4	221	33	14	12	38	1.84
387682--387814	32	3.8	32	74	16	97	32	15	12	39	1.84
387818--387983	63	2.5	65	82	6	174	25	19	14	40	1.89
387951--388013	28	2.2	28	91	5	101	25	12	15	46	1.82
387967--388030	28	2.3	28	86	0	92	26	20	15	37	1.92
388059--388419	134	2.7	134	83	0	445	26	29	17	26	1.98
388317--388436	43	2.9	40	74	7	116	23	34	17	25	1.96
391087--391127	22	1.9	22	85	5	57	56	2	14	26	1.51
391977--392428	149	3.0	149	94	0	762	26	15	21	36	1.93
392640--392700	21	2.9	21	80	4	61	49	1	18	31	1.57
392642--392707	33	2.0	33	82	5	80	50	1	16	31	1.55
397195--397646	149	3.0	149	95	0	780	26	15	21	36	1.93
403241--403282	13	3.2	13	96	0	75	50	4	7	38	1.51
418559--418607	21	2.3	21	82	10	55	32	6	18	42	1.75
427828--427915	3	28.3	3	81	6	95	42	0	1	56	1.06
430827--430854	3	9.3	3	100	0	56	32	0	0	67	0.91
436819--436907	23	3.9	23	77	0	88	20	20	25	33	1.97
436819--436915	46	2.1	46	82	0	122	20	19	23	36	1.95
436919--436965	24	2.0	24	95	0	85	23	19	23	34	1.97
437507--437547	19	2.3	19	83	8	50	48	4	4	41	1.46
438855--439055	65	3.1	64	80	9	194	30	19	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438897--439056	65	2.5	66	82	7	195	30	20	16	32	1.95
438953--439075	64	1.9	65	81	5	151	32	23	13	30	1.93
444270--444324	24	2.5	22	80	13	67	29	20	21	29	1.98
444282--444328	24	2.0	24	91	0	76	27	23	21	27	1.99
446585--446634	16	3.1	16	100	0	100	34	0	48	18	1.48
446983--447170	65	2.9	63	83	9	213	29	21	16	32	1.95
446981--447189	64	3.2	65	82	7	164	29	22	16	32	1.96
447963--448042	35	2.3	35	82	4	108	42	22	1	33	1.62
448217--448515	154	2.0	151	90	3	478	37	7	9	46	1.64
448924--448964	21	1.9	22	90	5	66	19	2	29	48	1.61
449021--449096	35	2.2	35	90	4	118	34	0	22	43	1.54
449195--449226	15	2.1	15	94	0	55	18	18	37	25	1.94
449576--449653	40	2.0	40	84	0	102	32	20	15	32	1.94
453254--453323	14	4.7	14	71	13	59	48	4	2	44	1.37
453825--453853	2	15.0	2	92	7	51	51	0	0	48	1.00
454828--454875	16	3.2	15	83	16	64	52	0	0	47	1.00
454814--454876	17	3.9	16	76	16	58	53	0	0	46	1.00
455952--456009	28	2.1	28	93	0	98	39	13	18	27	1.89
460964--461004	21	2.0	21	85	0	55	68	4	2	24	1.22
465746--465800	28	2.0	28	88	0	83	29	16	20	34	1.94
471741--471808	23	3.0	23	78	8	77	13	25	25	36	1.92
471749--471816	21	3.1	22	81	12	77	13	22	27	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472048--472086	15	2.6	15	87	0	51	41	2	20	35	1.66
473787--473858	33	2.2	33	85	5	92	43	26	11	19	1.84
475295--475328	16	2.1	17	89	10	54	23	0	5	70	1.09
481020--481062	23	1.9	22	90	4	68	39	11	6	41	1.68
489306--489351	24	2.0	23	86	4	65	73	0	0	26	0.83
500990--501024	9	3.9	9	92	0	61	45	20	8	25	1.79
502892--502951	20	3.0	20	85	4	86	35	10	20	35	1.86
505090--505164	24	3.0	24	80	11	71	56	0	2	41	1.13
505126--505213	25	3.4	26	76	14	76	51	0	6	42	1.28
505317--505397	23	3.8	22	65	24	57	50	1	12	35	1.48
505321--505462	39	3.7	39	82	10	166	45	1	16	37	1.56
505473--505510	20	2.0	20	90	10	62	65	0	2	31	1.06
507616--507680	32	2.0	32	100	0	130	30	12	47	9	1.72
511368--511399	13	2.3	15	89	10	50	53	0	37	9	1.34
513976--514007	10	3.2	10	100	0	64	59	9	0	31	1.29
514072--514103	14	2.3	14	94	0	55	37	0	9	53	1.34
516428--516471	21	2.1	21	87	4	63	38	6	0	54	1.27
518948--519267	159	2.0	161	97	2	610	32	25	12	30	1.92
520557--520585	14	2.1	14	100	0	58	34	13	13	37	1.85
525438--525510	31	2.6	28	74	17	80	24	24	15	35	1.94
525489--525530	16	2.6	16	84	0	57	14	26	21	38	1.91
525938--525963	13	2.0	13	100	0	52	30	23	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527494--527657	82	2.0	81	97	1	310	30	18	13	37	1.89
528049--528120	31	2.3	31	100	0	144	45	22	9	22	1.81
533028--533323	151	2.0	145	93	6	506	39	7	11	40	1.70
533572--533821	113	2.2	112	94	2	439	28	20	15	36	1.93
533784--533860	38	2.0	39	95	5	140	38	12	18	29	1.88
533852--533903	17	3.1	17	69	20	54	21	23	9	46	1.80
533671--533967	144	2.0	149	92	6	498	31	18	16	33	1.93
533821--534037	107	2.0	110	92	5	368	29	20	15	35	1.93
534740--535191	114	4.0	114	94	0	742	31	19	15	33	1.93
535884--535959	13	5.8	13	76	17	68	3	15	0	80	0.86
535884--535943	23	2.6	23	82	10	68	5	13	0	81	0.84
535885--535955	18	3.9	18	76	10	56	4	14	0	81	0.83
535884--535952	23	3.0	23	78	16	54	4	14	0	81	0.84
546584--546613	15	1.9	16	93	6	53	73	0	0	26	0.84
548836--548892	3	19.0	3	85	7	71	59	0	0	40	0.97
548836--548900	21	3.1	21	85	10	89	61	0	0	38	0.96
549334--549386	26	2.0	26	96	0	97	20	18	16	43	1.88
549798--549863	30	2.2	30	86	5	89	36	25	28	9	1.87
550078--550133	24	2.3	24	96	0	103	35	16	19	28	1.93
557401--557429	2	14.5	2	100	0	58	48	0	51	0	1.00
561496--561523	14	2.0	14	100	0	56	57	21	14	7	1.61
570965--571004	20	2.0	20	85	9	55	72	0	20	7	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570965--571004	21	2.0	20	85	5	53	72	0	20	7	1.08
575271--575316	24	1.9	24	86	0	65	26	32	4	36	1.76
577711--577793	31	2.7	31	87	3	116	32	14	4	48	1.65
579504--579568	10	6.6	10	80	16	57	84	0	15	0	0.62
579506--579573	18	3.6	18	76	18	66	82	0	16	1	0.75
579502--579568	16	4.2	16	80	14	68	85	0	14	0	0.61
580585--581290	134	5.3	135	83	4	801	36	15	19	29	1.92
580585--581237	267	2.4	267	84	3	861	36	15	18	29	1.92
581436--581487	25	2.1	24	82	10	61	51	38	0	9	1.35
582918--582962	21	2.3	20	82	14	58	13	4	4	77	1.07
586181--586231	12	4.3	12	76	18	54	31	0	1	66	1.03
586214--586345	29	4.7	27	70	20	92	42	0	1	56	1.08
586192--586329	12	11.2	13	66	19	82	40	0	1	57	1.07
586220--586299	26	3.2	25	80	15	76	43	0	1	55	1.08
586193--586346	61	2.5	64	91	7	248	40	0	1	57	1.10
586244--586326	36	2.2	38	83	14	102	42	0	1	56	1.07
586306--586372	21	2.9	23	73	13	66	40	1	1	56	1.17
586355--586400	18	2.5	19	75	17	51	39	0	0	60	0.97
586191--586390	62	3.3	61	82	10	173	41	0	1	57	1.12
586340--586390	18	2.9	18	78	16	54	41	1	0	56	1.10
586861--586920	31	1.9	31	90	6	95	43	10	5	41	1.60
586989--587029	18	2.3	18	100	0	82	26	29	9	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587246--587272	2	13.5	2	100	0	54	48	0	0	51	1.00
603894--603932	19	2.0	20	95	5	71	51	0	0	48	1.00
603965--603989	2	12.5	2	100	0	50	52	0	0	48	1.00
605346--605384	18	2.2	18	90	0	60	23	0	7	69	1.14
605550--605611	19	3.2	20	78	15	60	61	0	0	38	0.96
605561--605612	19	2.9	18	81	15	63	57	0	0	42	0.98
605630--605694	24	2.8	23	90	4	103	47	0	0	52	1.00
605660--605733	39	2.0	35	87	10	103	54	1	0	44	1.08
605657--605784	62	2.1	61	91	5	206	57	1	0	41	1.08
605598--605792	86	2.2	87	83	9	254	54	2	0	43	1.11

Tables:   1   2   3   4   5   6   7   8