genome.fa.s8594.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008594.1 Hibiscus syriacus cultivar Beakdansim tig00111543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1173925

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 631 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305994--306065	30	2.4	30	100	0	144	41	12	27	18	1.86
332705--332734	13	2.2	13	94	5	51	86	0	0	13	0.57
332863--332905	18	2.4	18	92	0	68	72	0	6	20	1.08
333408--333556	73	2.0	74	87	3	212	57	12	2	28	1.47
333915--333973	32	2.0	29	81	15	68	52	6	0	40	1.28
334117--334169	20	2.7	20	72	16	56	30	30	18	20	1.97
334222--334453	20	11.4	20	72	10	123	37	24	18	19	1.94
334237--334450	81	2.6	80	81	10	240	37	24	18	20	1.94
334295--334450	41	3.8	41	91	1	260	37	23	18	19	1.94
335014--335081	20	3.4	19	79	6	73	52	17	16	13	1.74
335091--335131	19	2.2	19	90	0	64	48	24	17	9	1.76
335153--335209	14	3.7	14	75	20	60	8	24	22	43	1.81
335140--335257	33	3.4	33	87	9	155	11	23	19	44	1.84
335164--335257	20	5.1	19	72	21	83	11	24	19	44	1.84
336952--337331	94	4.1	94	97	1	683	21	12	19	47	1.82
337390--337495	14	6.2	18	71	22	77	46	19	22	11	1.82
337413--337523	33	3.4	33	90	2	163	45	20	22	10	1.82
337568--337654	20	4.3	20	89	0	129	22	19	19	37	1.94
337586--337665	40	2.0	40	85	0	106	22	18	17	41	1.90
338114--338198	42	2.0	42	84	4	109	23	38	16	21	1.92
338114--338227	42	2.7	42	77	12	101	23	37	16	21	1.93
339582--339617	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339719--339814	33	2.8	33	85	3	120	42	19	22	14	1.88
339823--339948	19	6.8	19	81	10	154	17	22	16	43	1.87
339953--340041	20	4.4	20	85	2	126	17	20	24	37	1.94
339955--340041	40	2.2	40	91	4	140	18	19	24	37	1.94
342474--342525	24	2.2	24	92	0	86	38	21	19	21	1.94
343382--343514	20	6.7	20	86	1	133	21	19	21	37	1.94
343389--343514	40	3.2	40	91	2	191	19	19	23	38	1.94
343389--343514	60	2.1	60	88	2	182	19	19	23	38	1.94
343511--343551	21	2.0	21	90	0	64	39	17	26	17	1.91
350333--350389	28	2.0	29	93	3	98	63	5	7	24	1.41
350336--350401	28	2.4	28	85	10	82	65	6	9	19	1.42
351474--351503	15	1.9	16	93	6	53	83	3	0	13	0.77
351599--351645	18	2.6	19	90	6	64	68	0	2	29	1.02
352158--352339	84	2.2	82	90	3	276	56	10	1	32	1.41
352265--352329	25	2.6	25	82	2	69	61	7	1	29	1.33
352497--352537	21	2.0	21	85	0	55	2	17	43	36	1.62
352692--352757	25	2.6	25	86	9	82	48	6	0	45	1.27
352796--352937	6	24.8	6	75	12	84	40	0	57	2	1.10
352799--352926	20	6.4	20	78	10	129	38	0	59	2	1.10
352799--352917	26	4.6	26	77	10	127	37	0	59	2	1.11
352796--352917	32	3.8	32	86	6	165	38	0	59	2	1.11
352954--353005	25	2.1	25	92	0	86	32	15	7	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353502--353542	19	2.2	18	86	4	55	43	9	0	46	1.36
353739--353774	18	1.9	18	88	5	54	44	13	0	41	1.44
355082--355132	20	2.5	20	80	6	57	64	13	13	7	1.48
357022--357119	32	3.1	32	83	2	126	37	21	11	29	1.88
377763--377821	23	2.6	23	97	0	109	38	22	5	33	1.76
378031--378094	23	2.8	23	83	9	85	35	25	21	17	1.95
379914--380249	168	2.0	168	99	0	663	21	22	18	37	1.94
382644--382687	20	2.1	22	91	8	74	31	11	18	38	1.86
383928--383998	17	4.6	17	67	22	57	49	11	15	23	1.77
383910--384006	44	2.2	44	98	0	185	45	9	16	28	1.78
384411--384507	44	2.2	44	98	0	185	45	9	16	28	1.78
383545--385047	501	3.0	501	98	0	2880	40	16	13	29	1.86
384914--385008	44	2.2	44	96	0	172	47	11	13	27	1.78
391174--391223	19	2.7	19	71	17	52	52	8	4	36	1.50
395144--395185	22	1.9	22	85	0	57	28	7	19	45	1.76
395661--395710	15	3.2	15	77	8	55	30	0	12	58	1.34
396127--396155	10	2.9	10	100	0	58	20	37	0	41	1.53
396123--396162	10	4.0	10	90	0	53	27	35	0	37	1.57
396209--396260	9	6.1	9	76	13	56	34	0	1	63	1.06
396208--396257	17	3.0	17	91	2	75	36	0	4	60	1.16
398439--398501	25	2.5	25	82	10	74	20	3	11	65	1.38
402437--402524	12	7.6	12	67	7	56	26	20	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402462--402524	23	2.7	23	92	0	108	26	20	30	22	1.98
403376--403415	14	2.9	14	96	0	71	12	12	0	75	1.06
404369--404420	26	2.0	26	100	0	104	38	15	7	38	1.76
405028--405806	131	5.9	131	95	0	1378	39	25	12	22	1.89
410282--410316	2	17.5	2	100	0	70	48	0	0	51	1.00
414480--414527	26	2.0	24	84	12	62	39	2	2	56	1.23
414623--414701	23	3.5	22	79	10	88	55	1	2	40	1.21
414598--414691	46	2.0	45	82	8	109	54	1	3	41	1.23
415232--415302	31	2.3	31	90	0	106	23	9	15	50	1.74
415523--415554	15	2.1	15	94	0	55	34	0	0	65	0.93
422056--422113	30	1.9	30	82	6	73	15	10	18	55	1.68
422893--422918	2	13.0	2	100	0	52	0	50	0	50	1.00
426222--426252	3	10.7	3	93	6	55	70	29	0	0	0.87
426464--426733	138	2.0	138	85	1	371	27	16	29	27	1.97
426736--426929	67	2.9	66	82	6	223	43	13	18	24	1.86
426961--427097	67	2.1	66	81	4	159	37	9	17	35	1.82
429716--429753	18	2.1	19	90	5	60	50	5	21	23	1.69
433003--433096	11	8.5	10	74	16	71	1	15	4	78	0.96
440980--441084	53	1.9	55	88	3	160	38	7	20	34	1.81
441384--441466	29	2.8	29	92	1	139	43	10	14	31	1.80
446127--446209	29	2.8	29	92	1	139	43	10	14	31	1.80
446442--446546	53	1.9	55	88	3	160	38	7	20	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448685--448724	2	20.0	2	94	0	71	50	2	0	47	1.14
449566--449659	49	1.9	49	95	0	170	14	30	19	35	1.92
450992--451318	163	2.0	164	99	0	647	29	28	13	27	1.94
455813--455850	20	1.9	20	100	0	76	31	21	23	23	1.98
457240--457277	20	1.9	20	88	0	58	23	18	18	39	1.92
457365--457432	23	3.0	23	80	4	75	20	25	23	30	1.98
460343--460388	22	2.1	22	84	15	60	78	0	10	10	0.97
460434--460480	23	2.0	23	84	8	60	74	2	8	14	1.15
460423--460526	27	4.0	25	73	22	72	71	2	9	16	1.25
460519--460561	10	4.3	10	85	8	61	79	6	9	4	1.06
460717--460784	26	2.6	25	79	9	66	76	4	7	11	1.13
461466--461523	23	2.4	23	77	5	62	17	8	24	50	1.74
462894--463603	229	3.1	229	96	0	1298	44	7	8	39	1.63
463635--463698	23	2.8	23	85	0	92	35	4	20	39	1.73
464123--464178	23	2.4	23	84	0	76	39	5	17	37	1.73
464600--464655	23	2.4	23	90	0	94	37	3	21	37	1.71
465070--465133	23	2.8	23	85	0	92	35	4	20	39	1.73
463402--466978	480	7.5	482	96	1	6598	41	7	10	40	1.68
465551--465614	23	2.8	23	87	0	92	37	4	20	37	1.74
466035--466092	23	2.5	23	94	0	98	36	6	18	37	1.78
466512--466575	23	2.8	23	90	0	101	35	4	21	37	1.75
477364--477419	27	2.0	27	83	10	69	44	3	12	39	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478727--478778	13	4.2	13	78	14	65	19	44	25	11	1.84
481232--481315	12	7.1	11	68	24	55	23	15	19	41	1.89
481232--481346	24	4.8	24	88	4	160	24	15	19	40	1.90
481235--481363	24	5.4	23	80	10	98	25	13	20	41	1.88
483464--483507	23	1.9	23	100	0	88	18	45	20	15	1.85
483468--483518	13	4.2	13	73	14	54	19	41	23	15	1.90
483509--483550	15	2.7	15	92	3	66	21	30	21	26	1.98
495265--495365	35	2.9	35	95	0	184	32	27	30	8	1.87
495453--495567	24	4.8	24	91	4	178	40	20	16	23	1.91
498011--498045	15	2.3	15	90	0	52	37	25	20	17	1.94

Tables:   1   2   3   4   5   6