genome.fa.s8594.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008594.1 Hibiscus syriacus cultivar Beakdansim tig00111543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1173925

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 631 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
879136--879444	108	2.9	108	84	4	383	24	25	17	32	1.97
879136--879442	162	1.9	163	81	4	379	24	26	17	31	1.97
879443--879523	37	2.2	37	86	8	112	19	17	17	45	1.85
879974--880761	214	3.7	214	95	0	1405	31	19	16	32	1.94
880675--880762	42	2.1	41	82	2	104	30	21	22	25	1.99
885925--885974	6	8.2	6	82	10	57	54	14	14	18	1.72
885934--885968	7	5.3	7	90	10	56	57	14	14	14	1.66
885934--885975	13	3.2	13	96	0	75	59	14	11	14	1.61
891923--891973	3	17.7	3	80	15	63	60	1	0	37	1.08
894003--894048	24	1.9	24	86	8	67	39	8	8	43	1.66
894185--894214	2	15.0	2	100	0	60	50	0	0	50	1.00
894671--894788	63	1.9	62	85	5	166	29	17	21	31	1.96
894664--894788	31	4.0	31	75	6	117	28	17	20	32	1.96
894935--894975	21	2.0	20	85	4	55	36	0	7	56	1.27
908810--908867	20	2.8	20	86	2	80	34	22	13	29	1.93
912319--912456	28	5.0	28	66	18	83	28	20	25	25	1.99
912375--912621	55	4.5	55	80	7	275	25	22	25	26	2.00
912354--912614	27	9.4	27	65	19	83	26	21	26	25	1.99
912321--912642	55	5.8	55	75	14	254	26	21	25	26	1.99
912738--912889	81	1.9	81	92	0	259	30	23	30	15	1.95
919228--919262	2	17.5	2	100	0	70	51	0	0	48	1.00
919262--919299	2	19.0	2	100	0	76	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922625--922670	21	2.0	24	84	12	62	58	0	2	39	1.10
925514--925558	2	22.5	2	100	0	90	48	0	0	51	1.00
926263--926417	84	1.8	84	91	2	258	30	23	16	29	1.97
926417--926659	115	2.1	117	89	2	375	45	17	9	27	1.78
930286--930373	32	2.9	31	74	11	92	37	6	23	31	1.81
931793--931835	22	2.0	22	90	0	68	18	18	18	44	1.87
931793--931835	12	3.8	12	78	12	54	18	18	18	44	1.87
934926--934966	21	2.0	21	95	0	73	41	0	17	41	1.49
940902--940955	24	2.3	23	90	3	81	33	25	22	18	1.97
941166--941251	44	1.9	45	90	2	138	41	15	12	30	1.84
941451--941485	2	17.5	2	100	0	70	51	0	0	48	1.00
941900--942052	20	7.6	20	88	1	225	23	20	13	42	1.87
941913--942052	61	2.3	60	88	2	217	22	22	12	42	1.87
941900--942052	81	1.9	80	93	1	261	23	20	13	42	1.87
946284--946323	2	20.0	2	100	0	80	50	0	0	50	1.00
949649--949691	18	2.4	19	84	11	63	25	18	34	20	1.96
951456--951554	21	4.7	21	77	3	101	23	17	34	25	1.96
951778--951817	21	1.9	21	89	0	62	50	10	10	30	1.69
952982--953022	19	2.1	19	86	4	55	31	0	14	53	1.41
956275--956299	13	1.9	13	100	0	50	20	48	16	16	1.82
958666--958828	24	6.8	24	90	2	204	25	12	20	41	1.87
958688--958747	12	5.0	12	75	15	61	28	10	20	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963345--963478	24	5.6	24	83	3	126	26	13	19	41	1.88
963363--963481	48	2.5	48	86	2	159	26	14	20	38	1.91
967308--967426	24	5.0	24	87	4	159	25	14	20	40	1.90
967324--967426	12	8.6	12	66	19	54	25	13	21	39	1.90
967308--967426	48	2.5	48	88	2	177	25	14	20	40	1.90
967290--967426	72	1.9	72	86	3	195	24	13	19	42	1.87
979390--979447	19	3.1	19	100	0	116	32	15	31	20	1.94
980310--980416	18	5.9	18	89	0	151	19	19	32	28	1.96
980690--980793	18	6.1	16	81	13	86	17	22	32	27	1.96
980706--980793	18	4.9	18	84	6	117	18	20	32	28	1.96
980690--980793	36	3.0	36	84	8	128	17	22	32	27	1.96
980691--980793	54	2.0	50	86	7	143	17	21	33	28	1.96
984452--984496	19	2.3	20	96	3	83	17	20	31	31	1.96
988807--988844	20	1.9	20	94	0	67	21	23	23	31	1.98
998555--998594	22	1.9	21	90	10	64	35	7	27	30	1.84
1001438--1001470	10	2.9	12	86	13	52	36	3	15	45	1.61
1001612--1001769	29	5.3	29	78	6	138	41	3	18	35	1.69
1002808--1002861	26	2.1	26	85	0	72	25	7	18	48	1.74
1008401--1008587	75	2.5	75	84	1	232	28	6	14	49	1.68
1008690--1008715	12	2.2	12	100	0	52	7	38	19	34	1.80
1014376--1014440	29	2.2	29	100	0	130	32	20	21	26	1.97
1017488--1017517	15	1.9	16	93	6	53	26	0	36	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022916--1022975	30	2.0	30	96	0	111	28	15	13	43	1.84
1025883--1026004	44	2.8	44	85	3	149	29	13	23	33	1.93
1040055--1040104	26	1.9	26	95	0	91	38	16	22	24	1.93
1044641--1044702	27	2.3	27	91	2	99	33	12	11	41	1.79
1044911--1045065	43	3.5	43	80	7	168	43	17	9	29	1.80
1044927--1045054	45	2.9	44	83	4	152	44	16	9	29	1.79
1055234--1055315	22	3.7	22	75	9	69	25	32	23	18	1.97
1066051--1066081	15	2.1	15	100	0	62	35	6	32	25	1.82
1067066--1067117	24	2.2	24	83	16	74	55	3	0	40	1.18
1067184--1067247	33	2.0	32	81	9	76	48	0	3	48	1.17
1067511--1067644	62	2.2	62	95	0	241	41	5	15	37	1.72
1067923--1067964	23	1.9	22	90	9	68	52	2	0	45	1.13
1066715--1068429	851	2.0	854	95	1	3059	44	8	9	37	1.67
1068790--1068876	14	6.2	14	69	9	52	49	1	2	47	1.21
1068826--1068889	33	2.0	32	81	9	76	48	0	3	48	1.17
1067573--1072192	791	5.9	799	95	2	8059	44	8	8	37	1.66
1069505--1069573	24	2.9	25	79	18	76	52	2	1	43	1.25
1069624--1069687	33	2.0	32	81	9	76	48	0	3	48	1.17
1070304--1070344	21	2.0	21	90	0	64	53	2	0	43	1.13
1070413--1070476	33	2.0	32	81	9	76	48	0	3	48	1.17
1071149--1071193	14	3.1	14	78	15	56	37	2	2	57	1.23
1071863--1071914	24	2.2	24	83	16	74	51	3	0	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071975--1072042	30	2.3	32	82	12	83	48	0	1	50	1.10
1072692--1072744	23	2.3	23	86	0	79	35	18	7	37	1.80
1072620--1072952	87	3.9	87	91	2	521	34	15	10	40	1.81
1072790--1072834	23	2.0	23	86	0	63	37	15	11	35	1.83
1072881--1072925	21	2.1	21	87	0	63	35	17	8	37	1.81
1073408--1073513	30	3.5	30	75	10	117	18	6	17	56	1.62
1073646--1073693	22	2.2	22	84	0	60	14	6	22	56	1.61
1075571--1075654	31	2.7	32	83	7	100	35	21	10	32	1.88
1094161--1094224	3	21.0	3	81	9	76	67	0	1	31	1.00
1103535--1103857	139	2.3	138	89	2	488	26	21	16	36	1.94
1103673--1104171	253	2.0	251	90	3	779	26	22	16	34	1.95
1104411--1105105	36	19.1	36	67	11	326	37	11	17	32	1.87
1104574--1105066	145	3.4	146	89	3	724	36	12	18	31	1.89
1104574--1105075	73	6.8	73	89	3	706	36	12	18	32	1.88
1110293--1110372	34	2.6	30	78	19	94	73	2	3	20	1.10
1112277--1112318	21	2.0	21	86	9	59	45	23	0	30	1.53
1112595--1112668	21	3.3	22	81	9	78	37	25	20	16	1.93
1113617--1113664	19	2.5	19	100	0	96	18	39	14	27	1.90
1116333--1116854	43	12.2	42	85	3	602	33	20	21	24	1.97
1116333--1116854	85	6.1	85	84	4	619	33	20	21	24	1.97
1120625--1121049	41	10.3	41	81	4	467	33	17	19	29	1.95
1120669--1121031	125	2.9	124	87	1	523	34	17	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120588--1121049	166	2.8	167	85	2	592	33	17	19	29	1.94
1123014--1123101	27	3.3	27	67	17	76	46	9	2	42	1.48
1126808--1126929	40	3.0	41	80	2	156	29	15	17	37	1.90
1126819--1127022	109	1.9	108	82	5	259	28	15	16	39	1.88
1126992--1127076	41	2.1	41	84	0	107	37	14	8	40	1.75
1134463--1134518	19	2.9	19	91	0	94	35	3	17	42	1.67
1134844--1134870	11	2.5	11	100	0	54	48	18	7	25	1.74
1135104--1135156	27	2.0	27	92	7	90	3	15	28	52	1.59
1139092--1139127	10	3.6	10	96	0	63	27	2	22	47	1.65
1141901--1141958	3	19.0	3	82	3	62	56	3	0	39	1.16

Tables:   1   2   3   4   5   6