Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008594.1 Hibiscus syriacus cultivar Beakdansim tig00111543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1173925

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 631 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1142096--1142361
91
2.9
91
92
1
419
25
21
13
39
1.90
1142429--1142870
136
3.3
136
92
1
728
24
22
19
33
1.97
1143310--1143644
40
8.4
40
97
0
607
40
12
15
30
1.85
1143557--1143625
23
3.3
23
62
29
62
40
14
11
33
1.82
1143827--1143877
21
2.4
21
93
0
84
45
15
9
29
1.79
1145294--1145389
35
2.7
35
93
1
156
32
22
13
31
1.93
1152864--1152899
10
3.6
10
96
0
63
27
2
22
47
1.65
1155628--1155683
3
19.3
3
78
7
53
57
5
0
37
1.22
1155718--1156034
38
8.7
36
74
14
240
46
4
5
43
1.47
1155839--1156034
69
2.8
69
77
12
179
46
4
5
42
1.47
1157460--1157518
26
2.3
26
81
13
70
16
8
0
74
1.05
1158546--1158578
17
1.9
17
93
0
57
6
12
9
72
1.26
1158908--1158991
43
2.0
43
97
0
159
29
13
30
26
1.93
1159249--1159293
19
2.4
19
88
3
65
11
15
8
64
1.49
1162694--1163572
84
10.7
81
81
5
946
29
25
20
24
1.99
1162675--1163597
249
3.7
247
85
3
1151
29
25
21
23
1.99
1162666--1163597
333
2.8
327
85
5
1223
29
25
21
23
1.99
1164152--1164461
38
8.7
36
72
16
218
46
3
5
43
1.46
1164268--1164351
28
2.7
31
81
13
95
41
3
7
47
1.48
1164277--1164365
31
2.8
32
77
14
96
42
3
7
46
1.49
1165632--1165686
2
27.5
2
100
0
110
49
0
0
50
1.00
1165919--1165977
26
2.3
26
81
13
70
16
8
0
74
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1167171--1167245
34
2.2
33
81
11
82
30
0
5
64
1.16
1167203--1167278
31
2.4
33
80
13
95
38
0
1
60
1.05
1168985--1169032
21
2.3
21
85
0
60
25
39
12
22
1.89
1169036--1169129
21
4.5
21
92
5
129
18
35
26
20
1.95
1169648--1169740
31
2.9
33
82
9
120
54
4
3
37
1.36
1170128--1170721
246
2.4
247
94
3
1043
32
19
25
22
1.97
1170128--1170721
124
4.8
124
94
3
1054
32
19
25
22
1.97
1170790--1170828
15
2.6
15
79
0
51
35
30
0
33
1.58
1173835--1173889
21
2.6
23
88
11
82
43
10
3
41
1.57

Tables:   1   2   3   4   5   6

The End!