genome.fa.s8653.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008653.1 Hibiscus syriacus cultivar Beakdansim tig00111644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778368

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1032 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1308695--1308767	31	2.3	32	83	9	96	49	0	0	50	1.00
1308796--1308825	12	2.5	12	94	0	51	13	16	46	23	1.82
1309230--1309328	20	4.9	20	89	0	144	25	25	20	29	1.99
1310143--1310202	24	2.5	24	83	0	84	25	18	18	38	1.93
1312425--1312459	18	1.9	18	94	0	61	54	25	2	17	1.57
1312658--1312828	34	4.9	34	76	8	144	36	22	18	22	1.95
1312696--1312834	74	1.9	74	84	0	188	34	21	20	23	1.97
1312630--1312792	20	8.8	20	71	15	116	34	22	17	25	1.96
1312800--1312843	20	2.2	20	84	4	54	29	25	20	25	1.99
1312833--1312890	20	2.9	21	82	10	77	12	17	27	43	1.84
1312989--1313050	14	4.3	14	77	6	61	45	16	1	37	1.57
1314465--1314557	42	2.2	42	80	3	107	22	17	39	20	1.92
1315043--1315126	18	4.4	18	88	8	105	36	26	17	19	1.94
1315054--1315127	20	3.8	20	89	3	98	36	24	18	20	1.95
1315345--1315394	18	2.8	18	100	0	100	42	6	20	32	1.76
1317114--1317167	20	2.7	20	85	0	72	40	24	16	18	1.90
1317565--1317606	22	1.9	22	85	9	59	23	14	35	26	1.93
1317782--1317855	20	3.7	20	90	0	112	27	18	25	28	1.98
1317844--1317894	20	2.5	20	100	0	102	23	21	17	37	1.94
1317891--1317957	21	3.2	21	89	0	89	40	17	20	20	1.92
1321260--1321294	18	1.9	18	94	0	61	54	25	2	17	1.57
1321465--1321678	20	11.6	20	68	17	124	34	22	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1321493--1321663	34	4.9	34	79	8	162	36	22	18	22	1.95
1321531--1321669	74	1.9	74	86	0	197	35	22	20	22	1.96
1321668--1321725	20	2.9	21	82	10	77	12	17	27	43	1.84
1323335--1323391	21	2.7	21	100	0	114	22	21	35	21	1.96
1323265--1323392	42	3.0	42	78	7	118	21	18	38	21	1.94
1323882--1323927	20	2.4	19	89	7	67	39	28	17	15	1.90
1323954--1324021	20	3.4	20	95	0	127	16	20	25	38	1.92
1324173--1324218	18	2.6	18	100	0	92	41	4	21	32	1.73
1325940--1326013	20	3.7	20	81	0	76	45	21	14	17	1.84
1326390--1326446	22	2.6	22	82	0	78	19	19	40	21	1.92
1326613--1326683	20	3.5	20	94	0	115	26	19	26	26	1.99
1326611--1326765	40	3.8	40	73	7	125	30	19	23	26	1.98
1327243--1327301	27	2.2	27	87	0	82	45	8	6	38	1.61
1328468--1328516	21	2.3	21	96	0	89	40	10	10	38	1.73
1334097--1334136	15	2.6	17	74	25	52	52	0	0	47	1.00
1334103--1334160	19	3.0	19	73	12	55	51	0	0	48	1.00
1334259--1334331	37	1.9	38	94	2	130	17	36	9	35	1.83
1337479--1337561	43	1.9	43	87	4	123	30	8	15	45	1.76
1338412--1338462	19	2.8	18	82	11	59	39	1	1	56	1.22
1344722--1344824	36	2.9	36	91	2	163	45	16	13	24	1.83
1351232--1351688	226	2.0	227	97	0	862	38	12	7	42	1.70
1352289--1352391	36	2.9	36	88	0	161	43	17	13	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1355554--1356386	416	2.0	416	90	1	1323	27	23	15	34	1.94
1360129--1360188	23	2.6	22	86	5	75	31	30	21	16	1.96
1361337--1361420	22	3.7	23	80	6	82	51	4	2	41	1.36
1364070--1364146	40	1.9	40	82	10	95	33	12	14	38	1.84
1366813--1366848	15	2.3	16	90	4	56	5	16	69	8	1.33
1371297--1371488	105	1.8	105	100	0	384	45	4	7	42	1.52
1383633--1383719	38	2.3	38	84	4	113	45	9	5	39	1.60
1385659--1385712	22	2.4	23	80	20	62	46	0	0	53	1.00
1386488--1386517	13	2.3	13	100	0	60	6	16	46	30	1.73
1396017--1396066	2	27.0	2	84	15	72	50	0	0	50	1.00
1397210--1397250	15	2.7	16	77	11	50	29	9	4	56	1.53
1398911--1399089	75	2.4	76	85	1	245	48	17	6	27	1.71
1399741--1399765	7	3.6	7	100	0	50	64	0	0	36	0.94
1401672--1401721	25	2.0	25	96	0	91	26	12	12	50	1.74
1405059--1405107	25	2.0	25	83	0	62	24	10	16	48	1.76
1408249--1408282	18	2.0	17	88	11	52	52	5	17	23	1.66
1410187--1410225	19	2.2	17	86	9	51	53	0	20	25	1.45
1412227--1412260	18	2.0	17	88	11	52	52	5	17	23	1.66
1415231--1415453	103	2.2	103	94	1	394	26	13	24	35	1.93
1415471--1415529	23	2.6	23	88	0	82	22	27	23	27	1.99
1417336--1417426	28	3.2	28	74	18	80	39	10	10	38	1.76
1420073--1420114	21	2.0	21	82	13	52	52	7	11	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1420482--1420553	31	2.3	31	86	9	94	20	16	9	52	1.72
1427679--1427722	23	1.9	23	86	9	63	45	11	13	29	1.79
1428079--1428116	19	2.1	19	90	5	60	39	5	5	50	1.48
1434446--1434513	34	2.0	34	82	0	82	44	23	7	25	1.79
1441540--1441776	120	2.0	119	97	0	447	33	15	22	28	1.95
1442286--1442325	19	2.0	20	95	4	73	25	15	12	47	1.80
1449034--1449112	34	2.3	35	91	2	124	35	2	18	43	1.64
1455608--1455658	17	3.1	16	75	10	50	45	1	0	52	1.12
1465223--1465461	119	2.0	121	96	1	446	30	16	25	26	1.96
1471327--1472502	587	2.0	586	97	0	2226	34	21	16	27	1.94
1478146--1478236	20	4.9	20	68	20	72	34	5	15	45	1.69
1478145--1478292	53	2.8	52	94	3	262	33	4	13	48	1.63
1478251--1478290	20	2.0	20	95	0	71	37	5	12	45	1.64
1481974--1482005	16	2.0	16	93	0	55	21	0	31	46	1.52
1484888--1484948	19	3.2	19	88	0	95	39	29	9	21	1.85
1484945--1484992	21	2.3	21	96	0	87	22	22	27	27	1.99
1484982--1485044	21	3.0	21	97	0	117	19	26	23	30	1.98
1485201--1485252	16	3.1	17	72	13	54	59	5	0	34	1.21
1485605--1485656	16	3.1	17	78	13	63	59	3	0	36	1.16
1485760--1485908	21	7.1	21	89	0	235	32	22	26	19	1.97
1485963--1486015	21	2.5	21	93	0	88	20	22	20	35	1.96
1486603--1486915	158	2.0	158	96	1	583	35	12	14	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1487981--1488015	18	1.9	18	100	0	70	17	22	34	25	1.96
1488628--1488669	21	2.0	21	95	0	75	30	23	21	23	1.99
1495229--1495282	24	2.2	24	100	0	108	35	3	3	57	1.34
1495229--1495291	24	2.7	24	90	4	76	36	4	3	55	1.37
1507990--1508038	25	2.0	25	88	11	75	59	0	8	32	1.27
1508254--1508304	28	1.9	25	84	11	66	49	3	1	45	1.32
1512466--1512504	18	2.2	18	90	0	60	82	10	2	5	0.93
1515731--1515790	29	2.0	31	90	6	97	35	6	16	41	1.75
1515995--1516036	21	2.0	21	85	0	57	26	21	23	28	1.99
1516710--1516751	14	2.7	16	85	10	52	9	14	11	64	1.50
1517227--1517270	20	2.2	20	83	0	52	29	13	27	29	1.94
1520153--1520233	18	4.2	20	74	15	55	60	0	2	37	1.10
1520423--1520486	26	2.5	25	85	9	85	37	0	1	60	1.06
1521907--1521956	15	3.4	15	71	15	50	62	2	6	30	1.31
1522184--1522223	20	2.0	20	90	0	62	47	0	25	27	1.52
1523626--1523703	21	3.7	21	98	0	147	26	10	8	53	1.64
1525067--1525117	17	3.1	17	79	17	54	58	0	29	11	1.33
1525312--1525349	18	2.2	18	90	4	60	57	2	2	36	1.26
1525373--1525422	18	2.9	17	77	16	59	72	0	2	26	0.96
1526420--1526488	24	2.9	24	85	6	88	17	26	24	31	1.97
1526420--1526496	23	3.3	23	81	13	77	16	25	23	33	1.96
1530938--1530972	18	1.9	18	88	0	52	74	2	2	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1537508--1537681	29	6.0	28	69	11	91	20	12	12	55	1.68
1537497--1537651	58	2.7	57	77	5	177	20	9	13	56	1.64
1540332--1540489	21	7.8	20	72	7	86	38	25	17	18	1.92
1540456--1540704	20	12.5	20	86	2	259	36	24	18	19	1.94
1541386--1541432	24	2.0	24	87	8	69	25	14	21	38	1.92
1541607--1541631	12	2.1	12	100	0	50	72	0	28	0	0.86
1543935--1544037	19	5.6	19	83	13	144	14	24	17	43	1.86
1544114--1544167	14	3.6	14	75	18	54	46	20	22	11	1.82
1544096--1544186	32	2.8	33	93	5	157	45	18	23	13	1.84
1544096--1544243	19	8.6	19	71	22	130	43	18	22	15	1.87

Tables:   1   2   3   4   5   6   7   8   9