genome.fa.s8653.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008653.1 Hibiscus syriacus cultivar Beakdansim tig00111644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1778368

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1032 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1662374--1662585	103	2.1	103	93	0	361	18	10	20	50	1.77
1665107--1665153	14	3.7	14	71	26	50	51	4	0	44	1.21
1665105--1665154	23	2.1	24	96	3	93	48	4	0	48	1.20
1665424--1665479	16	3.5	16	80	0	58	35	10	21	32	1.88
1665420--1665490	32	2.2	32	79	0	79	36	12	23	26	1.91
1666059--1666093	16	2.2	15	90	10	52	48	2	0	48	1.16
1668490--1668522	16	2.1	16	94	0	57	51	0	0	48	1.00
1680214--1680262	18	2.7	18	78	12	55	30	28	12	28	1.93
1687204--1687432	107	2.2	106	87	2	343	35	27	12	24	1.92
1694344--1694404	22	2.7	23	92	5	106	54	0	3	42	1.17
1694344--1694412	22	3.1	22	87	8	88	55	0	5	39	1.24
1696470--1696524	16	3.4	16	89	0	92	9	10	21	58	1.60
1697696--1697761	33	2.0	33	88	5	98	37	13	13	34	1.84
1699419--1699453	2	17.0	2	94	5	61	48	2	0	48	1.16
1699678--1699731	24	2.2	24	96	0	99	29	11	37	22	1.89
1702570--1702674	4	25.5	4	90	5	156	46	24	4	23	1.71
1706089--1706160	30	2.4	30	80	0	81	40	13	4	41	1.64
1706508--1706570	32	2.0	32	81	9	76	58	4	3	33	1.35
1707760--1707812	21	2.5	21	84	0	70	20	26	18	33	1.96
1707802--1707956	20	7.7	20	83	2	211	40	19	20	20	1.92
1707802--1707954	41	3.8	40	84	3	207	39	19	20	20	1.92
1707802--1707954	61	2.5	61	96	0	279	39	19	20	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1707943--1707994	20	2.6	20	100	0	104	30	25	21	23	1.99
1708528--1708598	20	3.5	19	84	5	88	52	18	16	12	1.75
1708528--1708606	20	3.9	21	85	5	85	51	16	18	12	1.75
1708609--1708645	19	1.9	19	88	0	56	48	21	18	10	1.78
1708667--1708753	14	5.6	14	67	19	57	10	21	22	44	1.82
1708650--1708802	33	4.5	33	83	9	184	11	22	20	46	1.82
1708739--1708802	20	3.1	21	82	8	78	10	25	17	46	1.80
1710449--1710799	94	3.8	94	94	2	570	22	12	18	46	1.83
1710902--1710976	19	4.2	19	78	16	97	48	21	22	8	1.76
1710983--1711046	19	3.6	19	66	20	57	12	21	20	45	1.84
1711019--1711055	19	1.9	19	88	0	56	13	16	21	48	1.80
1711529--1711589	21	2.9	21	72	0	68	22	36	19	21	1.95
1712934--1712969	14	2.6	14	95	0	63	33	0	22	44	1.53
1713087--1713169	33	2.5	33	90	3	123	48	22	20	8	1.76
1713108--1713184	19	4.3	19	76	18	85	45	25	18	10	1.81
1713180--1713297	19	6.7	19	67	19	85	11	24	20	43	1.85
1713184--1713277	33	2.8	33	96	0	170	11	24	19	44	1.84
1713250--1713304	20	2.8	19	83	2	65	18	21	21	38	1.94
1715752--1715798	24	2.0	24	95	0	85	36	17	21	25	1.94
1716660--1716709	20	2.5	20	96	0	91	22	18	20	40	1.92
1716705--1716747	21	2.0	21	86	4	59	37	16	25	20	1.93
1717495--1717546	24	2.2	24	96	0	95	34	26	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1720656--1720707	20	2.5	22	75	15	65	32	19	17	30	1.95
1725846--1725900	21	2.7	19	80	11	56	63	3	1	30	1.22
1735554--1735581	2	14.0	2	100	0	56	50	0	0	50	1.00
1736285--1736340	17	3.4	16	76	13	51	26	10	3	58	1.48
1737728--1737787	28	2.1	28	81	0	66	23	11	11	53	1.70
1739914--1740053	68	2.0	69	93	4	239	30	6	12	51	1.64
1739992--1740301	111	2.8	113	90	6	472	32	11	6	49	1.64
1740463--1740718	59	4.3	60	85	4	304	34	26	20	17	1.95
1740418--1740718	59	5.0	59	82	6	279	35	26	20	17	1.95
1740440--1740726	20	14.4	19	82	11	276	35	26	20	17	1.95
1744674--1744744	34	2.2	32	84	5	88	21	26	16	35	1.95
1745027--1745068	21	2.0	21	95	0	75	26	28	21	23	1.99
1745175--1745225	19	2.7	19	90	0	75	35	13	13	37	1.85
1745174--1745240	19	3.6	18	84	8	71	37	13	10	38	1.79
1745305--1745364	29	2.0	31	90	6	97	41	16	6	35	1.75
1748928--1749303	181	2.1	181	89	4	580	41	2	9	46	1.50
1749699--1749737	20	2.0	20	94	0	69	25	20	15	38	1.92
1750533--1750574	21	2.0	22	95	4	77	35	9	19	35	1.84
1751833--1751888	29	2.0	28	92	3	94	37	3	7	51	1.47
1754347--1754387	21	2.0	21	85	0	55	41	17	0	41	1.49
1754747--1754779	2	16.5	2	93	0	57	48	3	0	48	1.17
1758124--1758153	15	1.9	15	93	6	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1761465--1761947	55	8.9	55	88	2	679	27	27	15	29	1.96
1761465--1761948	108	4.4	110	91	1	692	27	27	15	29	1.96
1762946--1763001	8	6.9	8	77	22	55	14	10	0	75	1.06
1762946--1763003	14	4.2	14	76	24	61	15	12	0	72	1.12
1766509--1766536	8	3.5	8	100	0	56	50	10	0	39	1.37
1776742--1776770	12	2.3	13	94	5	51	65	3	0	31	1.09

Tables:   1   2   3   4   5   6   7   8   9

The End!