genome.fa.s8694.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008694.1 Hibiscus syriacus cultivar Beakdansim tig00111723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1352611

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 663 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218745--218966	113	2.0	114	93	0	383	29	22	15	32	1.95
219296--219344	16	2.8	17	84	12	64	46	4	10	38	1.57
219693--219743	14	3.9	13	80	17	61	1	19	0	78	0.85
219696--219732	17	2.2	17	90	0	56	0	16	0	83	0.64
227063--227094	15	2.1	15	94	0	55	46	9	18	25	1.79
230907--231130	103	2.1	104	81	7	256	43	7	8	41	1.61
231204--231237	2	17.0	2	93	0	59	52	0	0	47	1.00
232599--232651	3	17.7	3	77	14	56	62	0	0	37	0.96
232601--232648	10	4.9	10	82	12	64	62	0	0	37	0.95
241186--241262	33	2.3	33	86	4	102	35	12	14	37	1.84
241198--241264	33	2.0	33	91	0	107	34	10	13	41	1.79
243131--243223	42	2.2	41	82	1	105	37	12	22	26	1.91
243647--243908	26	11.0	26	68	18	185	46	9	22	20	1.80
243648--243792	72	2.0	72	97	0	272	46	11	22	20	1.82
243720--243884	46	3.6	46	94	0	285	46	9	23	20	1.80
243648--243942	118	2.5	118	87	2	405	47	9	22	20	1.79
243753--243908	72	2.2	72	81	4	181	46	8	23	20	1.79
243799--243942	72	2.0	72	90	2	227	47	8	22	20	1.77
244329--244528	81	2.5	82	82	8	230	38	11	22	28	1.89
244381--244553	81	2.1	82	78	9	185	40	9	21	27	1.85
244650--244698	2	24.5	2	100	0	98	51	0	0	48	1.00
247714--247862	81	1.8	81	88	0	217	36	12	21	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247714--247891	81	2.2	81	79	4	207	36	11	21	30	1.88
247744--247916	81	2.1	81	80	2	186	37	11	21	28	1.89
248013--248045	2	16.5	2	100	0	66	51	0	0	48	1.00
259341--259377	15	2.5	15	91	4	58	54	8	29	8	1.59
259349--259383	15	2.3	15	95	0	61	40	8	34	17	1.80
259462--259610	77	1.9	79	86	2	212	38	9	6	45	1.61
262079--262161	33	2.5	32	90	5	130	37	10	13	38	1.79
263104--263145	15	2.7	16	82	14	52	78	0	4	16	0.91
264370--264587	85	2.6	84	81	5	246	25	18	20	35	1.95
265578--265696	36	3.3	36	85	2	166	37	14	21	26	1.91
265590--265681	37	2.5	36	89	1	130	41	16	21	20	1.90
266583--266676	31	2.9	32	85	4	136	37	21	10	30	1.87
267364--267501	69	2.0	69	97	0	258	25	15	22	36	1.93
267574--267637	13	4.8	12	82	17	74	1	12	3	82	0.85
267573--267635	26	2.4	27	92	5	103	3	12	3	80	0.94
270697--270771	19	3.9	18	75	15	62	77	5	4	13	1.09
270739--270780	10	4.4	9	82	17	50	78	2	2	16	0.96
270739--270780	19	2.2	19	87	8	59	78	2	2	16	0.96
270971--271030	16	3.5	17	77	11	61	75	0	3	21	0.95
271122--271186	8	8.1	8	96	0	67	49	4	0	46	1.22
271129--271203	2	38.0	2	90	2	116	52	1	1	45	1.17
271186--271232	22	2.1	23	84	11	62	72	0	2	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271176--271231	19	3.1	19	80	15	64	67	0	1	30	1.01
276848--277248	36	11.0	36	80	5	367	36	6	25	31	1.83
276749--277147	107	3.7	106	79	6	381	37	8	24	29	1.84
276777--277248	72	6.5	72	78	6	398	36	7	25	30	1.83
282250--282289	18	2.2	18	90	0	62	50	2	12	35	1.54
292797--293842	34	31.8	34	76	10	838	22	16	26	33	1.96
292797--293698	98	9.2	96	73	14	390	22	16	26	34	1.96
292862--293687	353	2.3	355	80	9	910	22	17	26	33	1.96
293454--293688	128	1.9	125	90	2	371	21	17	27	33	1.96
297837--297866	15	2.0	15	100	0	60	26	13	6	53	1.64
299885--299937	24	2.4	21	82	14	63	33	11	28	26	1.91
299894--299939	24	1.9	24	95	0	83	34	10	30	23	1.89
300582--300637	23	2.4	23	84	0	67	21	16	26	35	1.94
310625--310723	21	4.6	21	73	10	76	27	27	21	24	1.99
310625--310723	44	2.3	42	86	10	130	27	27	21	24	1.99
310643--310744	44	2.4	42	76	15	118	26	26	23	23	2.00
312626--312654	14	2.0	15	93	6	51	6	3	27	62	1.37
313123--313161	19	2.1	19	85	9	53	38	2	15	43	1.60
317270--317372	23	4.5	23	84	4	109	27	22	22	28	1.99
317259--317372	46	2.5	46	82	0	147	25	22	22	28	1.99
318935--319398	163	2.8	164	75	7	454	39	12	9	38	1.75
324563--324596	13	2.6	13	95	0	59	26	17	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324589--324703	57	2.0	58	82	3	142	35	23	16	24	1.95
328830--328860	16	2.0	16	93	6	55	22	6	12	58	1.58
332902--332941	21	1.9	21	89	0	62	10	25	40	25	1.86
336772--336811	21	1.9	21	90	10	64	37	10	0	52	1.35
342606--342642	4	9.0	4	88	5	56	72	0	2	24	0.97
342609--342642	17	2.0	17	94	0	59	73	0	2	23	0.97
343041--343071	13	2.5	13	94	5	55	77	0	0	22	0.77
346536--346677	42	3.4	42	75	7	110	26	13	9	51	1.70
348864--348997	60	2.2	60	82	5	155	30	17	19	32	1.95
349209--349354	60	2.5	60	76	5	154	30	17	19	32	1.95
352028--352164	60	2.3	60	83	7	172	32	17	16	32	1.93
355037--355096	24	2.7	22	80	12	70	33	21	18	26	1.96
359720--359765	2	23.0	2	100	0	92	50	0	0	50	1.00
361404--361443	21	1.9	21	100	0	80	30	0	15	55	1.41
368145--368367	3	75.0	3	73	12	140	29	8	1	60	1.36
368194--368353	85	1.9	87	84	4	216	31	8	1	58	1.38
368195--368368	22	8.1	22	69	15	69	31	8	1	59	1.37
370529--370996	139	3.4	139	82	6	504	30	13	12	42	1.82
391918--391957	8	5.1	8	81	6	55	85	2	12	0	0.71
391923--391957	11	3.1	11	84	8	52	85	2	11	0	0.69
391919--391956	12	3.2	12	85	7	60	84	2	13	0	0.73
393145--393206	20	3.2	19	70	25	58	38	11	25	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393102--393521	117	3.6	116	85	5	505	36	16	21	25	1.94
393670--393886	3	72.3	3	73	12	178	30	5	1	62	1.26
393651--393705	23	2.4	22	81	6	56	30	10	0	58	1.33
393792--393887	22	4.4	22	81	9	61	30	3	2	64	1.20
396605--397259	84	7.8	83	84	1	727	25	18	22	34	1.96
397391--397554	64	2.6	62	77	12	176	27	14	19	38	1.91
397567--397920	121	2.9	124	85	1	480	25	16	24	33	1.96
397883--398035	54	2.7	54	88	6	216	26	14	22	37	1.92
399545--399582	20	1.9	20	89	10	60	0	21	2	76	0.91
405298--405351	14	3.8	14	75	4	54	22	1	7	68	1.24
405304--405336	15	2.2	15	94	0	57	24	3	6	66	1.28
405701--406157	139	3.3	139	88	3	654	30	13	12	43	1.81
405701--406227	277	1.9	278	84	4	715	29	13	12	44	1.81
409542--409580	18	2.2	18	86	9	53	46	7	17	28	1.76
409533--409567	18	1.9	18	88	0	52	51	8	14	25	1.70
409891--409933	20	2.2	20	86	0	59	34	13	16	34	1.88
417537--417577	21	2.0	21	90	0	64	14	21	0	63	1.30
422303--422327	12	2.1	12	100	0	50	32	0	8	60	1.26
423481--423529	21	2.3	21	75	0	53	46	26	0	26	1.53
423505--423565	28	2.2	28	87	0	86	45	24	0	29	1.53
427119--427183	11	5.6	11	72	22	53	26	26	23	24	2.00
427115--427184	23	3.0	23	82	2	95	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431585--431669	43	2.0	43	83	0	107	28	17	22	31	1.97
433049--433123	5	14.6	5	76	15	57	8	17	0	74	1.04
436470--436509	20	2.1	19	85	4	53	62	7	20	10	1.50
437760--437809	2	25.0	2	100	0	100	50	0	0	50	1.00
443521--443561	21	2.0	21	90	0	64	80	12	7	0	0.90
450911--450981	22	3.5	20	77	9	63	29	14	28	28	1.95
450928--450981	22	2.6	21	80	8	65	25	14	31	27	1.95
451468--451513	24	1.9	24	95	0	83	39	17	23	19	1.92
457608--457658	20	2.6	19	87	9	68	31	17	31	19	1.95
458159--458279	45	2.7	45	93	0	215	37	13	25	23	1.91

Tables:   1   2   3   4   5   6