genome.fa.s8694.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008694.1 Hibiscus syriacus cultivar Beakdansim tig00111723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1352611

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 663 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458709--458749	20	2.1	19	86	4	55	34	7	17	41	1.77
463031--463123	44	2.1	44	89	0	141	30	15	20	34	1.93
463311--463350	21	1.9	21	89	0	62	47	22	7	22	1.76
470333--470611	123	2.3	123	85	1	362	30	17	17	33	1.94
470423--470529	41	2.6	41	79	5	101	30	18	16	33	1.94
470340--470671	123	2.7	123	79	6	300	31	16	18	33	1.94
471083--471118	18	2.0	18	94	0	63	44	13	0	41	1.44
471828--471865	15	2.5	15	80	20	51	0	7	13	78	0.94
473640--474007	20	18.2	20	79	13	355	36	24	17	21	1.94
474501--474548	20	2.4	20	92	0	87	14	18	18	47	1.82
476375--476473	21	4.7	21	80	8	112	23	33	20	23	1.97
478347--478432	39	2.2	39	91	2	138	18	13	19	47	1.82
478736--478788	24	2.2	24	89	0	79	47	13	1	37	1.54
479202--479295	20	5.0	20	70	17	67	39	20	20	20	1.93
479685--479733	19	2.7	18	90	6	64	22	8	28	40	1.82
479692--479733	19	2.3	19	95	4	77	23	9	30	35	1.87
481934--481987	24	2.2	24	90	0	81	40	14	20	24	1.90
482899--482952	20	2.8	19	88	2	72	35	11	20	33	1.88
482880--482954	19	3.8	20	84	3	91	33	10	18	37	1.86
482903--482971	19	3.5	19	86	6	75	33	13	18	34	1.90
482955--483146	20	9.6	20	78	11	171	20	16	22	40	1.91
482879--483146	60	4.5	60	77	8	237	23	14	21	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486276--486318	13	3.2	13	74	6	50	6	16	0	76	0.99
486256--486335	5	15.6	5	72	19	58	5	16	0	78	0.91
491103--491144	19	2.2	19	86	0	57	40	11	16	30	1.85
491102--491162	22	3.0	20	79	13	70	36	13	19	31	1.90
491725--492205	68	7.1	68	89	0	685	30	14	25	29	1.95
492238--492448	91	2.3	90	90	3	325	47	6	21	24	1.74
492238--492806	45	12.6	45	85	3	312	40	9	22	27	1.85
492293--492919	90	7.0	89	84	2	641	38	10	22	28	1.87
492433--492919	45	10.9	45	87	1	656	35	11	23	29	1.90
495981--496019	20	2.0	21	90	10	64	51	7	20	20	1.72
496572--496626	14	3.7	15	70	15	51	61	1	1	34	1.17
497290--497362	12	6.8	11	73	23	50	61	1	1	35	1.13
497290--497338	23	2.2	22	82	13	57	59	2	0	38	1.09
498051--498101	24	2.1	24	100	0	102	33	37	21	7	1.82
504229--504347	38	3.1	38	89	4	184	39	10	4	46	1.57
504234--504347	40	2.9	40	92	2	187	39	9	3	47	1.54
505881--505919	20	1.9	20	85	15	53	38	0	25	35	1.56
506785--506873	18	4.9	18	92	0	142	19	19	32	29	1.96
513683--513731	18	2.7	18	80	0	62	18	20	32	28	1.96
521479--521523	5	8.6	5	88	9	63	6	15	0	77	0.96
522774--522816	18	2.4	18	96	0	77	11	48	9	30	1.71
535357--535448	44	2.1	43	88	6	132	22	15	16	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538049--538095	23	2.1	21	84	7	58	57	6	8	27	1.53
542480--542551	20	3.6	20	100	0	144	19	13	40	26	1.89
552469--552502	17	2.0	17	88	0	50	14	26	32	26	1.95
554601--554653	21	2.6	21	91	8	83	33	22	7	35	1.83
554764--554909	12	12.2	12	71	5	71	17	12	17	52	1.74
554765--554877	24	4.7	24	82	6	122	16	12	18	52	1.75
554995--555039	19	2.4	19	84	0	54	20	13	26	40	1.89
555989--556022	14	2.3	15	90	5	52	14	2	14	67	1.34
557373--557468	31	3.1	31	96	0	174	20	25	10	43	1.83
565592--565636	23	2.0	23	90	0	72	24	22	20	33	1.97
568725--568752	14	2.0	14	100	0	56	14	14	14	57	1.66
570208--570243	16	2.2	17	95	5	65	41	19	5	33	1.75
571003--571051	23	2.1	23	100	0	98	28	24	24	22	1.99
574487--574529	16	2.6	16	88	3	59	48	0	2	48	1.14
575007--575047	20	2.0	20	85	0	55	43	7	0	48	1.30
575001--575045	20	2.3	19	81	7	54	46	6	0	46	1.29
579618--579764	42	3.5	41	73	15	147	31	2	11	55	1.47
579594--579828	84	2.9	82	84	6	309	30	2	12	55	1.48
584729--584768	5	7.8	5	88	5	62	17	2	0	80	0.83
586669--586881	84	2.7	80	85	8	267	30	1	13	53	1.51
587553--587602	19	2.5	20	81	18	61	22	8	0	70	1.13
588801--589017	109	2.0	108	91	0	353	25	12	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589205--589273	12	5.6	12	77	13	61	44	0	0	55	0.99
589205--589271	9	6.8	10	76	17	61	46	0	0	53	1.00
589195--589262	3	22.0	3	81	3	64	41	0	0	58	0.98
589220--589273	23	2.3	23	90	3	81	44	0	0	55	0.99
589723--589760	13	2.9	13	92	0	67	44	23	28	2	1.67
590593--590628	18	2.1	18	89	5	56	38	0	0	61	0.96
590600--590657	18	3.3	18	75	15	59	36	0	1	62	1.06
595983--596015	17	2.0	16	94	5	57	78	0	21	0	0.75
598106--598377	93	2.9	93	92	1	440	29	13	20	36	1.90
598288--598719	114	3.8	115	94	1	717	31	13	20	34	1.92
601324--601378	22	2.5	22	87	0	83	36	12	12	38	1.82
602057--602249	76	2.6	74	88	5	275	22	20	22	34	1.96
602184--602285	45	2.3	45	93	1	170	22	22	21	33	1.97
602228--602598	76	4.9	77	93	2	612	22	21	21	35	1.96
602533--602635	45	2.3	45	91	3	163	21	23	20	34	1.96
602057--602866	273	3.0	272	86	5	996	22	21	21	34	1.97
602457--602724	121	2.2	123	89	4	407	22	22	20	34	1.97
602381--602800	199	2.1	198	91	2	682	22	21	21	34	1.97
602577--602938	76	4.7	77	89	2	498	23	21	20	34	1.97
603067--603147	3	26.7	3	77	7	74	40	0	0	59	0.98
604447--604482	17	2.1	18	89	5	56	27	0	2	69	1.02
612918--613005	26	3.6	26	86	13	141	17	15	35	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612926--613004	21	3.5	21	82	15	104	17	15	35	31	1.91
614300--614340	17	2.4	17	87	0	64	41	2	19	36	1.65
616741--616792	19	2.7	19	78	0	59	21	9	17	51	1.73
618325--618378	24	2.2	24	93	0	90	20	18	20	40	1.91
620914--620948	14	2.5	14	100	0	70	37	22	31	8	1.85
620974--621014	19	2.2	19	95	0	73	9	12	24	53	1.68
620984--621077	33	2.8	33	87	3	127	12	19	21	46	1.82
621019--621077	19	3.4	19	71	22	65	15	22	16	45	1.84
621027--621077	17	3.1	17	69	25	54	13	23	17	45	1.84
624497--624552	20	2.8	20	81	10	78	39	19	25	16	1.91
624488--624642	33	4.5	33	86	5	184	45	17	23	14	1.85
624670--624764	40	2.4	40	78	7	113	14	18	15	50	1.78
624674--624764	20	4.6	20	80	9	96	15	17	16	50	1.78
625323--625555	20	11.5	20	74	6	164	21	16	23	37	1.93
625387--625555	40	4.2	41	83	0	207	21	17	22	38	1.93
625584--625683	21	4.8	22	74	14	86	21	20	22	37	1.95
625584--625738	42	3.8	42	71	20	98	20	18	22	38	1.94
626853--626899	23	2.0	24	87	4	69	46	6	14	31	1.70
628968--628995	2	14.0	2	100	0	56	50	0	0	50	1.00
629093--629157	22	3.0	22	79	0	58	55	1	4	38	1.30
630052--630210	46	3.5	46	82	6	191	25	23	9	42	1.84
630078--630155	20	3.7	20	79	12	93	23	29	8	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630233--630273	2	20.5	2	100	0	82	48	0	0	51	1.00
630440--632904	68	36.5	68	84	4	2846	29	23	13	33	1.93
633135--633293	55	2.9	54	84	6	194	33	22	8	35	1.85
633624--633847	95	2.4	94	88	4	324	27	24	13	34	1.93
633834--633892	20	2.9	21	79	20	72	27	20	15	37	1.92
633639--633886	95	2.6	93	84	7	243	26	22	14	35	1.93
643386--643448	18	3.5	18	86	0	90	19	44	20	15	1.87
645665--645799	72	1.9	72	81	9	168	20	24	25	29	1.99
646492--646560	35	2.0	35	91	0	111	50	4	30	14	1.62
651463--651530	35	2.0	34	88	8	104	48	2	35	13	1.57

Tables:   1   2   3   4   5   6