genome.fa.s8694.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008694.1 Hibiscus syriacus cultivar Beakdansim tig00111723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1352611

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 663 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122946--1123053	45	2.3	46	82	6	121	31	9	18	40	1.82
1123251--1123352	23	4.4	23	77	0	96	18	21	26	33	1.96
1123243--1123339	46	2.1	46	88	0	140	20	23	22	32	1.98
1123333--1123390	25	2.4	25	91	2	91	22	13	20	43	1.87
1123498--1123562	6	10.8	6	88	0	85	41	0	24	33	1.55
1135751--1135834	43	2.0	43	95	0	150	35	23	19	21	1.96
1146292--1146330	2	20.0	2	92	5	62	46	0	2	51	1.14
1152473--1152520	12	3.9	13	79	15	50	81	4	14	0	0.84
1152488--1152525	20	1.9	19	89	5	58	84	5	10	0	0.77
1158947--1158997	19	2.6	20	90	3	77	43	5	15	35	1.71
1159900--1159959	30	2.0	31	83	3	77	55	10	8	26	1.61
1165547--1165591	18	2.5	18	96	0	81	40	11	22	26	1.87
1168142--1168180	20	2.0	20	89	0	60	33	10	23	33	1.88
1172448--1172477	12	2.5	12	94	0	51	46	10	26	16	1.78
1172501--1172590	27	3.3	27	87	1	126	64	14	13	7	1.49
1172573--1172611	20	2.0	19	90	5	60	82	0	17	0	0.68
1175710--1175789	35	2.3	35	97	0	151	40	8	15	36	1.78
1180186--1180216	15	2.1	15	100	0	62	45	6	19	29	1.75
1181284--1181341	22	2.6	22	81	5	64	8	13	8	68	1.37
1181661--1181703	22	2.0	22	95	0	77	20	2	39	37	1.66
1197775--1197828	24	2.2	24	84	12	67	12	20	9	57	1.63
1203547--1203600	24	2.2	24	84	12	67	12	20	9	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1213535--1213597	24	2.6	24	89	0	90	20	14	14	50	1.77
1220749--1220805	25	2.3	25	93	0	96	38	17	8	35	1.81
1225098--1225132	16	2.2	17	90	10	56	22	0	5	71	1.07
1225875--1225916	18	2.3	18	83	0	57	78	9	7	4	1.08
1231018--1231065	12	3.8	12	79	17	53	83	2	14	0	0.74
1231012--1231065	19	2.9	19	81	15	60	83	1	14	0	0.73
1231012--1231063	11	5.1	10	81	9	61	84	1	13	0	0.70
1239315--1239357	19	2.2	20	87	4	61	48	6	9	34	1.62
1242562--1242605	6	7.2	6	84	5	61	0	18	2	79	0.83
1242562--1242608	25	1.9	24	91	4	76	0	17	4	78	0.90
1242562--1242605	19	2.4	18	84	3	61	0	18	2	79	0.83
1245854--1245895	13	3.3	13	83	3	59	83	0	14	2	0.75
1257258--1257303	20	2.3	21	81	11	60	26	21	0	52	1.47
1257487--1257526	21	1.9	21	89	0	62	72	0	27	0	0.85
1260938--1260965	14	2.0	14	100	0	56	21	42	0	35	1.53
1266358--1266393	19	1.9	18	88	5	54	0	16	2	80	0.83
1273108--1273150	15	2.9	15	80	10	52	62	0	20	16	1.32
1273337--1273376	13	3.1	13	79	13	55	0	17	5	77	0.94
1273764--1273791	14	2.0	14	100	0	56	35	0	42	21	1.53
1282463--1282506	13	3.4	13	84	9	63	2	20	0	77	0.88
1282465--1282504	12	3.2	12	89	3	53	2	22	0	75	0.93
1286763--1286829	11	5.5	11	76	16	62	1	17	0	80	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286778--1286822	9	5.2	9	84	10	67	0	20	0	80	0.72
1286763--1286829	25	2.7	25	95	0	116	1	17	0	80	0.79
1286768--1286829	20	3.2	18	86	11	79	1	17	0	80	0.79
1286853--1286896	13	3.4	13	84	9	63	0	20	0	79	0.73
1286854--1286890	18	2.1	18	90	10	58	0	21	0	78	0.75
1287263--1287290	14	2.0	14	100	0	56	35	0	42	21	1.53
1291503--1291552	5	10.6	5	95	4	79	0	22	0	78	0.76
1298878--1298933	24	2.4	24	90	3	87	62	16	12	8	1.53
1303566--1303620	24	2.3	25	81	6	60	29	21	16	32	1.95
1309550--1309592	14	3.1	14	86	3	52	27	39	0	32	1.57
1311178--1311217	20	2.0	20	85	9	55	47	15	12	25	1.80
1311661--1311702	22	1.9	22	85	9	59	40	0	19	40	1.51
1316963--1317063	33	3.0	33	80	11	82	32	1	33	31	1.69
1321395--1321495	33	3.0	33	80	11	82	32	1	33	31	1.69
1329733--1329842	35	3.2	34	83	3	132	31	3	36	28	1.75
1333852--1333882	8	3.8	8	95	4	53	77	0	22	0	0.77
1333835--1333888	17	3.1	16	80	20	56	74	1	22	1	1.02
1342103--1342154	21	2.6	21	84	6	72	36	11	5	46	1.64
1349606--1349645	21	1.9	21	85	10	55	60	0	27	12	1.33

Tables:   1   2   3   4   5   6

The End!