genome.fa.s8726.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008726.1 Hibiscus syriacus cultivar Beakdansim tig00111792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1298898

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 701 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254524--254553	15	2.0	15	93	0	51	63	10	0	26	1.26
257289--257347	15	3.9	14	88	6	55	20	1	55	22	1.52
257300--257348	15	3.3	15	94	0	89	20	2	59	18	1.48
257829--257873	3	15.0	3	85	0	63	37	2	33	26	1.69
260842--261211	179	2.1	179	93	0	632	40	12	16	30	1.86
261517--261650	72	1.9	72	84	3	180	30	16	21	31	1.95
261769--261812	21	2.1	21	84	12	56	27	9	9	54	1.62
263632--263673	2	21.0	2	90	0	57	50	7	0	42	1.30
263640--263935	161	1.8	161	86	4	436	41	13	9	35	1.77
264264--264524	87	3.0	87	90	1	398	32	14	10	42	1.80
264369--264412	23	1.9	23	95	0	79	34	20	11	34	1.88
264359--264409	23	2.2	23	89	0	75	31	21	9	37	1.86
264446--264493	23	2.1	23	84	0	60	33	20	8	37	1.83
264456--264505	23	2.2	23	85	0	64	36	16	10	38	1.82
266838--266952	61	1.9	61	85	3	160	24	17	26	31	1.97
272372--272442	21	3.4	21	76	19	60	47	7	1	43	1.39
273416--273473	17	3.5	17	88	4	82	13	5	44	36	1.66
273424--273469	17	2.8	16	93	6	83	13	6	45	34	1.69
273424--273488	33	2.0	32	82	11	78	16	4	43	35	1.69
274033--274484	222	2.0	223	95	2	816	31	11	14	42	1.82
282386--282426	20	2.0	21	95	4	75	34	21	19	24	1.97
288902--288982	40	2.1	39	90	2	126	19	44	6	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291556--291582	9	3.0	9	100	0	54	88	0	11	0	0.50
292657--292705	25	1.9	26	91	4	82	12	10	6	71	1.30
297587--297647	14	4.4	14	76	12	54	40	31	0	27	1.57
297603--297710	35	3.1	34	76	7	101	44	26	0	27	1.61
297583--297677	42	2.3	41	80	10	104	46	28	0	25	1.53
297694--297745	7	7.4	7	73	0	50	51	28	0	19	1.47
297630--297706	28	2.8	27	76	5	82	44	28	1	25	1.62
297694--297745	21	2.5	21	100	0	104	51	28	0	19	1.47
299802--299840	11	3.4	11	83	13	51	25	20	23	30	1.98
307936--307982	22	2.1	22	84	0	58	29	27	4	38	1.76
314885--314909	12	2.1	12	100	0	50	32	24	16	28	1.96
315286--315410	47	2.8	44	86	7	171	32	21	8	38	1.83
315286--315424	47	3.2	41	80	14	131	31	22	7	38	1.83
318010--318062	12	4.5	12	80	4	63	13	15	47	24	1.81
318060--318120	24	2.6	25	78	17	69	44	0	0	55	0.99
318154--318197	13	3.5	13	90	3	63	15	15	50	18	1.79
320357--320394	19	2.0	19	85	10	51	44	7	15	31	1.75
321535--321591	22	2.6	22	80	0	60	31	21	1	45	1.62
321589--323042	6	244.0	6	98	1	2822	49	0	16	33	1.46
323777--323814	20	1.9	20	88	0	58	23	34	31	10	1.89
324572--324797	103	2.2	103	93	0	389	26	14	23	36	1.93
324829--324872	23	1.9	23	95	0	79	25	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329735--330084	46	7.6	46	88	1	495	22	23	12	42	1.87
329967--330039	20	3.3	20	68	26	58	20	24	13	41	1.89
329735--330084	185	1.9	184	88	4	535	22	23	12	42	1.87
330006--330151	66	2.2	66	86	0	211	21	23	14	40	1.90
330066--330104	20	2.0	20	100	0	78	20	20	20	38	1.94
329967--330197	112	2.1	112	88	1	347	23	21	12	41	1.88
329867--330288	204	2.1	205	89	2	643	23	22	13	41	1.88
329921--330221	158	1.9	158	91	0	494	23	21	12	42	1.87
330079--330510	46	9.4	46	88	2	552	23	22	12	41	1.88
329837--330334	250	2.0	251	90	0	791	23	21	13	41	1.88
329976--330243	112	2.4	109	81	8	254	23	21	13	41	1.88
330423--330508	45	2.2	35	67	32	82	25	22	11	40	1.87
330939--330980	19	2.2	19	91	0	66	30	19	16	33	1.94
331005--331056	20	2.6	20	87	6	70	21	30	15	32	1.94
331163--331188	12	2.2	12	100	0	52	38	30	7	23	1.83
332775--332808	11	3.1	11	95	0	59	23	0	2	73	0.97
342040--342085	24	1.9	24	95	0	83	32	13	13	41	1.82
343378--343469	43	2.1	43	82	7	107	26	18	23	31	1.97
349695--349750	25	2.2	26	81	12	64	55	0	23	21	1.44
350871--350921	26	2.0	26	84	7	68	62	17	7	11	1.51
350867--350922	16	3.5	16	90	0	67	60	21	7	10	1.53
351997--352071	14	5.9	14	71	23	67	56	22	12	9	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352007--352081	10	6.7	10	76	21	69	54	25	12	8	1.64
352017--352082	14	5.3	14	73	26	76	53	25	13	7	1.66
352007--352105	34	2.9	34	77	8	85	51	24	14	10	1.72
351997--352082	24	3.6	24	96	0	154	54	23	12	9	1.66
356452--356864	106	3.9	106	84	2	547	23	16	24	36	1.94
356668--357149	262	1.8	264	92	0	815	22	18	25	33	1.97
356914--357147	106	2.2	104	83	6	299	21	19	24	33	1.97
357445--357514	36	1.9	36	88	0	104	40	15	21	22	1.91
358437--358487	22	2.3	22	100	0	102	21	11	29	37	1.89
364773--364811	20	1.9	21	89	5	62	5	10	10	74	1.21
364796--364851	13	4.2	13	78	10	60	1	14	5	78	1.00
372149--372193	21	2.1	22	83	4	56	64	2	4	28	1.25
372916--372997	15	6.2	13	66	16	51	51	0	0	48	1.00
372997--373027	12	2.6	12	94	0	53	19	45	22	12	1.84
375017--375054	19	2.0	19	85	10	51	34	10	10	44	1.73
379759--379790	16	1.9	17	93	6	57	43	6	25	25	1.77
380287--380312	3	8.7	3	100	0	52	0	69	0	30	0.89
389074--389141	32	2.1	32	89	5	102	26	16	19	38	1.92
389523--389565	22	2.0	22	85	0	59	20	18	9	51	1.74
393237--393277	20	1.9	23	85	14	61	19	9	12	58	1.61
393742--393776	14	2.6	14	86	4	54	42	8	0	48	1.33
394661--394705	21	2.1	21	83	0	54	33	13	6	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411790--411822	2	16.5	2	87	12	50	51	0	3	45	1.16
411985--412033	13	3.8	13	91	0	80	32	16	20	30	1.94
411979--412033	26	2.1	26	86	0	74	36	14	20	29	1.92
414628--414668	12	3.5	12	75	18	50	56	0	36	7	1.27
414628--414682	23	2.4	23	100	0	110	58	0	34	7	1.26
422934--423423	244	2.0	244	95	2	885	32	28	14	24	1.95
434089--434169	23	3.6	22	70	14	67	27	22	23	27	1.99
444160--444563	54	7.5	54	90	1	614	32	15	18	33	1.93
444352--444434	26	3.1	26	65	19	62	36	12	18	33	1.87
444623--444652	15	2.0	15	100	0	60	46	13	6	33	1.69
444904--444960	22	2.7	21	81	7	71	28	21	14	36	1.92
444904--444974	19	3.5	20	79	9	72	28	19	16	35	1.94
482985--483031	20	2.3	20	85	0	58	17	27	19	36	1.93
492285--492364	40	2.0	40	82	9	99	38	11	11	38	1.77
492595--492632	20	1.9	20	88	0	58	18	15	10	55	1.68
492595--492633	10	3.9	10	82	0	51	17	15	10	56	1.66
492641--492721	24	3.3	23	71	21	74	13	12	17	56	1.67
492662--492697	14	2.6	14	91	4	56	16	13	13	55	1.69
493323--493444	64	1.9	63	85	5	165	48	22	12	16	1.79
493888--493933	19	2.4	20	73	20	53	36	4	0	58	1.18
498293--498337	24	2.0	24	86	8	67	37	8	4	48	1.55
502808--502912	45	2.3	45	85	0	138	33	9	15	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502808--502926	45	2.6	43	81	7	123	34	10	14	41	1.79
503091--503496	58	7.0	58	77	5	349	37	8	12	42	1.73
503450--503536	44	1.9	46	88	4	133	47	4	5	42	1.48
503545--503625	39	2.1	39	88	4	119	38	11	7	43	1.68
503512--503702	97	2.0	98	88	5	289	38	8	8	45	1.65
503745--503875	59	2.3	58	79	10	144	40	5	10	43	1.62
504846--504901	15	3.5	15	73	21	51	19	26	33	19	1.96
504896--504950	21	2.7	21	86	8	78	16	30	32	20	1.94
504845--504928	33	2.5	33	92	3	132	17	28	33	20	1.95
507852--507922	34	2.2	32	84	5	88	22	29	15	32	1.95

Tables:   1   2   3   4   5   6