genome.fa.s8726.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008726.1 Hibiscus syriacus cultivar Beakdansim tig00111792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1298898

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 701 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086452--1086526	20	3.8	20	78	1	71	37	18	6	37	1.77
1088506--1088575	21	3.2	21	84	11	63	32	27	17	22	1.96
1088517--1088576	23	2.7	22	87	10	79	30	28	20	21	1.98
1092556--1092594	11	3.5	11	82	0	51	82	5	12	0	0.83
1109772--1109807	2	18.0	2	100	0	72	50	0	0	50	1.00
1111840--1112571	200	3.6	199	81	7	784	30	15	14	39	1.87
1114521--1114879	199	1.8	198	89	2	551	30	16	14	38	1.88
1114625--1115115	250	2.0	251	87	3	713	30	15	15	38	1.89
1116401--1116440	6	6.7	6	83	11	55	17	30	5	47	1.69
1116377--1116440	12	5.3	12	82	0	74	15	31	10	42	1.82
1117920--1118432	198	2.6	201	91	1	854	32	16	14	37	1.88
1122934--1122985	19	2.7	19	100	0	104	30	17	30	21	1.96
1123392--1123451	31	2.0	30	83	9	77	36	3	23	36	1.71
1129822--1129941	64	1.9	63	84	1	159	33	21	17	27	1.96
1130221--1130282	25	2.4	25	81	7	72	33	12	11	41	1.79
1130325--1130384	31	2.0	30	83	9	77	36	3	23	36	1.71
1130607--1130667	23	2.7	23	86	0	86	19	21	27	31	1.97
1130851--1130878	13	2.2	13	100	0	56	32	14	0	53	1.41
1132068--1132113	20	2.3	19	82	10	65	19	17	10	52	1.74
1133012--1133056	20	2.2	20	92	0	72	37	24	17	20	1.93
1133050--1133116	20	3.3	20	81	8	91	41	25	14	17	1.88
1133030--1133177	40	3.7	42	78	11	129	39	23	13	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1133064--1133175	19	5.7	20	85	5	122	39	23	12	25	1.89
1133084--1133196	19	5.8	20	86	5	124	38	23	11	25	1.89
1134070--1134123	24	2.2	24	93	0	90	20	18	20	40	1.91
1134298--1134330	12	2.8	12	90	0	57	72	0	24	3	0.98
1136394--1136429	18	2.0	18	88	0	54	55	22	2	19	1.56
1136720--1136765	20	2.3	20	96	0	83	41	21	21	15	1.90
1136903--1136957	25	2.2	25	96	0	101	25	7	21	45	1.77
1137202--1137288	39	2.2	39	91	0	138	47	18	16	18	1.83
1139027--1139116	21	4.3	21	73	8	76	18	22	35	23	1.96
1139046--1139125	42	1.9	42	84	0	106	22	18	35	23	1.96
1141322--1141352	12	2.5	13	89	10	55	77	16	6	0	0.97
1141326--1141358	12	2.8	12	95	4	59	75	15	9	0	1.03
1141569--1141611	22	2.0	22	95	0	77	20	9	44	25	1.81
1141744--1141792	20	2.5	20	86	0	71	20	18	18	42	1.89
1141811--1141864	20	2.7	20	77	11	74	25	14	31	27	1.95
1147283--1147320	19	2.2	18	86	13	53	57	0	2	39	1.12
1147832--1147879	23	2.2	21	88	7	69	60	2	25	12	1.43
1147839--1147891	12	4.5	11	75	11	52	60	1	22	15	1.44
1149077--1149289	36	5.9	36	82	4	250	21	23	18	36	1.95
1149077--1149294	72	3.0	72	84	4	278	20	23	17	37	1.94
1150708--1150915	36	5.8	36	82	6	242	22	25	17	34	1.96
1157294--1157354	23	2.9	21	85	7	70	24	32	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1161867--1162079	36	5.9	36	86	2	275	19	24	19	36	1.95
1165938--1165986	19	2.7	17	84	9	53	26	20	28	24	1.99
1165938--1166118	65	2.8	63	79	12	188	28	18	23	29	1.98
1165958--1166168	65	3.2	65	78	12	202	27	18	22	30	1.98
1174569--1174727	65	2.5	64	85	6	205	27	18	22	30	1.98
1175983--1176025	21	2.0	22	86	4	61	23	13	27	34	1.93
1184390--1184431	17	2.6	16	85	7	57	9	21	0	69	1.17
1189521--1189559	20	2.0	20	84	0	51	23	7	23	46	1.78
1189716--1189753	20	1.9	20	88	0	58	10	26	36	26	1.89
1198160--1198205	18	2.6	18	100	0	92	21	10	4	63	1.44
1199750--1199797	23	2.1	23	88	0	69	35	12	18	33	1.89
1201028--1201080	24	2.2	24	83	6	63	26	7	13	52	1.66
1201225--1201273	21	2.3	20	80	10	62	18	16	8	57	1.63
1201390--1201437	20	2.4	19	83	10	69	18	16	10	54	1.70
1201503--1201944	224	2.0	223	92	3	721	39	7	8	45	1.62
1202919--1203291	158	2.4	158	86	2	491	27	16	6	49	1.70
1205055--1205097	21	2.1	20	86	4	59	37	13	6	41	1.72
1209724--1209765	21	2.0	21	90	4	68	38	11	7	42	1.69
1216025--1216068	22	2.0	22	90	0	70	54	0	4	40	1.21
1221792--1221842	23	2.2	23	92	0	84	37	1	41	19	1.63
1222100--1222157	27	2.2	26	81	3	71	39	10	8	41	1.70
1223911--1223989	31	2.5	31	83	0	104	37	11	13	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1225756--1225813	21	2.8	21	86	5	73	17	13	29	39	1.88
1225778--1225863	44	2.0	44	90	0	136	23	19	24	32	1.98
1227797--1227916	32	3.9	31	79	5	118	25	17	20	36	1.94
1228937--1228975	2	19.5	2	100	0	78	48	0	0	51	1.00
1230797--1230846	21	2.4	21	93	6	84	26	30	22	22	1.99
1233849--1233906	18	3.1	18	79	13	71	31	13	8	46	1.74
1234130--1234208	20	3.8	20	76	17	70	24	34	20	21	1.97
1236315--1236368	23	2.3	23	81	15	58	48	1	14	35	1.55
1236528--1236646	30	3.8	31	85	5	136	26	15	21	36	1.93
1239144--1239196	23	2.3	23	93	0	88	47	15	26	11	1.79
1240185--1240225	21	1.9	22	90	5	66	19	26	4	48	1.69
1247318--1247365	2	24.0	2	100	0	96	50	0	0	50	1.00
1255782--1255812	15	2.1	15	100	0	62	67	0	0	32	0.91
1255962--1256073	43	2.7	42	76	8	113	26	16	33	23	1.96
1256006--1256484	134	3.6	134	75	9	500	25	15	31	27	1.96
1256010--1256578	260	2.2	262	91	2	926	25	16	31	26	1.97
1256715--1256935	66	3.4	63	79	13	236	41	13	16	28	1.86
1258124--1258188	11	6.0	11	79	15	73	0	13	4	81	0.84
1258124--1258190	20	3.2	20	81	10	80	0	14	4	80	0.86
1258133--1258211	12	6.2	13	77	15	69	0	18	5	75	0.97
1258124--1258194	24	3.0	24	84	13	78	0	16	4	78	0.90
1258109--1258224	44	2.5	46	86	4	146	0	18	6	74	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1266981--1267429	229	2.0	227	94	0	790	45	8	7	39	1.61
1267650--1267707	20	3.0	19	78	14	64	53	8	15	22	1.69
1270004--1270069	33	2.0	33	87	0	96	28	1	45	24	1.62
1271863--1271925	19	3.4	19	95	2	110	31	3	9	55	1.48
1272009--1273424	199	7.1	199	96	1	2535	37	15	15	32	1.88
1272009--1273424	595	2.4	594	96	1	2545	37	15	15	32	1.88
1274888--1274949	18	3.4	18	88	0	88	38	6	33	20	1.79
1274888--1274949	6	10.3	6	83	0	61	38	6	33	20	1.79
1274903--1274953	3	17.0	3	83	0	66	37	3	33	25	1.74
1274891--1274953	12	5.2	12	90	0	81	36	6	33	23	1.80
1276126--1276188	23	2.7	23	90	0	90	36	6	19	38	1.77
1276126--1276198	23	3.2	23	86	3	85	35	5	19	39	1.75
1294927--1295028	47	2.1	48	85	1	143	33	27	10	28	1.90

Tables:   1   2   3   4   5   6

The End!