genome.fa.s8726.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008726.1 Hibiscus syriacus cultivar Beakdansim tig00111792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1298898

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 701 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914681--914825	73	2.0	73	97	0	272	22	11	31	35	1.89
914754--915466	368	1.9	368	99	0	1399	36	12	19	31	1.89
916594--916634	20	2.0	20	90	0	64	36	19	19	24	1.95
920629--920691	33	1.9	32	87	3	90	30	15	31	22	1.95
923528--923579	20	2.6	20	93	0	86	38	15	5	40	1.71
923567--925500	978	2.0	972	99	0	3517	35	18	15	30	1.92
928176--928264	22	3.9	23	94	5	146	46	4	23	25	1.71
928902--928966	22	2.9	22	93	2	103	27	21	24	26	1.99
929733--929810	22	3.8	20	73	13	68	52	0	1	46	1.08
929766--929791	12	2.2	12	100	0	52	57	0	0	42	0.98
929731--929834	41	2.5	41	83	11	124	51	0	0	46	1.13
929810--929846	14	2.6	15	83	8	51	56	2	0	40	1.13
932507--932560	26	2.1	26	86	6	74	48	33	3	14	1.62
934044--934097	3	18.0	3	86	7	74	61	1	3	33	1.25
934250--934418	90	1.9	90	88	2	259	26	16	11	45	1.81
934459--934979	105	4.9	105	88	2	722	23	21	16	38	1.93
935186--935286	42	2.4	41	85	3	130	33	21	19	24	1.97
935302--935667	177	2.1	177	90	3	567	34	20	13	31	1.91
935808--936332	262	2.0	261	96	0	978	30	15	13	40	1.86
936901--937008	54	2.0	54	87	0	153	28	22	14	34	1.94
941242--941313	27	2.7	27	93	0	117	54	2	19	23	1.57
941263--941310	7	7.1	7	82	17	66	58	0	16	25	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941263--941310	13	3.6	13	88	5	78	58	0	16	25	1.38
941263--941320	27	2.1	27	93	0	98	56	1	17	24	1.50
943366--943405	17	2.4	17	91	4	64	52	0	0	47	1.00
943468--943520	23	2.3	23	96	0	97	49	9	7	33	1.64
944139--944189	26	2.0	26	84	0	66	43	35	7	13	1.73
947441--947483	21	2.0	21	86	0	59	48	25	9	16	1.75
947706--947757	24	2.2	24	86	6	70	23	7	28	40	1.82
947722--947941	59	3.8	59	76	7	218	36	9	16	38	1.80
948200--948257	27	2.1	27	81	6	64	29	13	13	43	1.83
951358--951405	25	1.9	25	95	0	87	27	12	10	50	1.73
952609--952669	31	2.0	31	90	0	95	27	6	4	60	1.42
952625--952667	20	2.2	20	86	0	59	27	4	4	62	1.35
955265--955341	31	2.5	31	91	0	127	32	15	28	23	1.95
955436--955521	45	1.9	45	85	4	120	38	4	2	54	1.34
955672--955715	2	22.0	2	100	0	88	50	0	0	50	1.00
956947--957030	22	3.8	21	79	14	57	29	4	2	63	1.28
956958--957030	22	3.3	22	80	12	60	31	2	2	63	1.23
957087--957134	18	2.7	18	87	6	62	16	10	2	70	1.24
957102--957137	14	2.7	13	87	8	54	19	5	0	75	1.00
957107--957137	14	2.3	14	94	5	55	19	3	0	77	0.90
958409--958491	31	2.7	31	84	0	103	33	13	25	27	1.93
959608--959645	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961418--961456	20	2.0	20	100	0	78	66	0	0	33	0.92
961410--961457	10	4.8	10	82	17	64	64	0	0	35	0.94
962065--962263	65	3.1	64	77	14	203	26	18	23	32	1.97
964900--964979	23	3.6	22	77	5	81	23	25	26	25	2.00
970800--970991	65	3.0	63	78	11	185	26	18	24	30	1.98
971386--971460	34	2.2	35	83	9	93	44	20	8	28	1.79
972016--972075	28	2.1	29	81	9	70	45	0	1	53	1.10
972045--972116	24	3.0	23	82	8	74	45	0	2	51	1.15
973547--973576	15	2.0	15	93	0	51	0	50	6	43	1.28
973524--973575	21	2.5	21	76	14	54	3	51	1	42	1.31
974007--974042	19	1.9	18	88	5	54	11	8	33	47	1.69
977036--977083	19	2.4	21	80	13	57	62	0	2	35	1.07
985931--985964	14	2.4	14	95	0	59	61	14	14	8	1.55
990002--990040	20	2.0	20	89	0	60	33	23	10	33	1.88
991212--991467	95	2.7	94	84	3	307	32	16	17	33	1.92
991966--992023	29	2.0	29	83	3	73	56	12	10	20	1.64
995137--995191	20	2.7	19	81	10	65	70	0	7	21	1.11
995347--995408	27	2.4	27	78	5	74	74	3	0	22	0.96
995341--995403	33	1.9	33	87	6	92	71	3	0	25	1.01
995564--995761	97	2.0	99	80	13	219	69	4	5	20	1.27
996690--996746	12	4.9	11	93	2	51	50	1	0	47	1.11
996702--996751	2	25.0	2	100	0	100	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011876--1011926	26	2.0	26	88	3	77	15	21	15	47	1.83
1014703--1014736	16	2.1	16	94	0	59	32	8	26	32	1.87
1021426--1021464	19	2.1	19	85	4	53	66	5	15	12	1.41
1032240--1032284	3	14.3	3	81	9	54	66	0	0	33	0.92
1032237--1032293	19	2.8	20	78	10	71	68	0	0	31	0.90
1033925--1033976	21	2.4	21	87	6	68	55	0	11	32	1.36
1033937--1033976	21	1.9	21	94	0	71	57	0	12	30	1.36
1035212--1035276	4	16.0	4	78	13	53	73	0	4	21	1.00
1035340--1035382	16	2.7	15	82	10	50	76	2	6	13	1.08
1035347--1035385	16	2.4	16	86	0	60	76	2	5	15	1.06
1037258--1037378	64	1.9	64	86	3	172	31	21	16	30	1.95
1045875--1045946	35	2.1	34	84	5	92	43	11	2	43	1.54
1045891--1046046	35	4.4	35	72	18	110	44	9	1	44	1.48
1045968--1046040	37	2.1	35	82	12	87	41	8	2	47	1.47
1046059--1046088	12	2.5	12	94	0	51	70	0	0	30	0.88
1048786--1048834	22	2.2	22	85	7	64	44	14	14	26	1.83
1050435--1050830	161	2.5	161	90	0	605	33	10	11	44	1.74
1054293--1054371	22	3.6	22	91	1	124	26	12	32	27	1.93
1054299--1054388	44	2.0	44	82	4	110	27	15	30	26	1.96
1054414--1054479	22	3.0	22	81	0	87	24	22	12	40	1.88
1057812--1057988	75	2.3	76	85	2	230	22	22	31	24	1.99
1060580--1060662	22	3.8	22	78	10	73	16	24	37	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066429--1066628	75	2.6	76	85	3	269	20	24	32	22	1.98
1069296--1069353	13	3.8	16	69	21	52	68	3	0	27	1.05
1069287--1069358	28	2.6	28	83	12	105	70	2	0	26	1.00
1070301--1070343	8	5.4	8	81	18	54	39	0	0	60	0.97
1070301--1070339	15	2.5	16	91	4	62	38	0	0	61	0.96
1070301--1070347	15	3.1	15	82	14	60	38	0	0	61	0.96
1070356--1070392	17	2.2	17	86	13	51	56	0	5	37	1.22
1071982--1072019	19	2.0	19	94	0	67	31	2	5	60	1.33
1071983--1072028	19	2.3	20	82	17	60	34	4	2	58	1.30
1073122--1073174	21	2.5	21	78	0	61	20	28	18	32	1.97
1073164--1073277	20	5.7	20	87	2	174	37	20	21	21	1.94
1073164--1073295	40	3.3	39	83	13	169	36	21	21	21	1.95
1073472--1073533	18	3.0	22	69	26	62	27	38	16	17	1.91
1073857--1073925	20	3.5	20	89	0	102	34	21	18	24	1.96
1073953--1074002	20	2.5	20	90	0	73	18	18	28	36	1.94
1073970--1074024	20	2.8	20	88	0	74	10	16	21	50	1.75
1073989--1074032	20	2.2	20	83	0	52	13	13	18	54	1.71
1075891--1075999	20	5.8	20	73	12	104	39	21	20	19	1.93
1075989--1076091	20	5.5	19	73	15	81	18	22	20	38	1.93
1078039--1078074	14	2.6	14	90	0	54	30	0	22	47	1.52
1078238--1078326	20	4.8	19	75	17	89	15	19	17	47	1.83
1078236--1078307	33	2.2	33	85	12	103	15	20	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1078238--1078379	53	2.7	53	84	1	176	16	20	19	43	1.88
1078331--1078419	20	4.4	20	82	2	108	17	21	24	35	1.95
1080856--1080907	24	2.2	24	82	0	59	36	21	19	23	1.95
1081745--1081901	20	7.8	20	75	11	76	22	21	18	37	1.94
1081750--1081901	40	3.8	40	78	9	148	21	21	18	38	1.93
1081755--1081901	60	2.4	60	83	5	172	22	20	18	38	1.93
1081898--1081942	20	2.2	21	88	4	65	37	17	26	17	1.93
1081819--1081943	61	2.0	61	80	3	135	27	20	21	31	1.98
1083904--1083960	18	2.9	19	85	12	80	49	8	12	29	1.70
1085960--1086030	34	2.1	34	86	2	99	25	25	15	33	1.95

Tables:   1   2   3   4   5   6