genome.fa.s8746.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008746.1 Hibiscus syriacus cultivar Beakdansim tig00111835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2013901

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870138--1870178	21	2.0	21	90	9	66	12	34	31	21	1.91
1871218--1871307	23	3.8	24	68	10	60	20	21	23	35	1.96
1873811--1873868	2	29.0	2	100	0	116	50	0	0	50	1.00
1877795--1877860	24	2.8	23	70	19	64	15	24	24	36	1.93
1877779--1877867	23	3.8	24	73	15	87	17	22	24	34	1.96
1878572--1878617	21	2.1	23	88	8	69	15	23	32	28	1.95
1878878--1878922	22	2.0	22	100	0	90	24	13	40	22	1.90
1879101--1879145	20	2.2	20	96	0	81	22	20	33	24	1.97
1879139--1879187	20	2.5	20	90	6	73	24	16	12	46	1.81
1879612--1879648	16	2.3	16	85	0	56	70	0	0	29	0.88
1879955--1880006	23	2.4	22	87	12	72	38	9	0	51	1.35
1880164--1880206	18	2.4	18	77	14	54	46	0	0	53	1.00
1880182--1880208	13	2.1	13	100	0	54	44	0	0	55	0.99
1880157--1880217	31	2.1	28	84	9	77	42	0	0	57	0.98
1880746--1880782	14	2.6	15	83	8	51	56	0	2	40	1.13
1889550--1889597	17	2.9	16	75	9	51	37	4	4	54	1.39
1893541--1893622	15	5.5	15	85	2	112	39	7	18	35	1.78
1893541--1893622	30	2.8	30	92	1	130	39	7	18	35	1.78
1893605--1893674	20	3.5	20	96	0	131	40	10	14	35	1.79
1893843--1893908	28	2.3	27	82	12	78	51	1	1	45	1.19
1893859--1893941	32	2.6	33	77	12	84	53	2	0	44	1.13
1893961--1894004	22	2.0	23	86	4	63	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1893965--1894021	21	2.6	22	81	10	64	52	0	0	47	1.00
1893901--1894021	54	2.3	51	77	19	133	50	0	0	47	1.12
1894214--1894325	42	2.7	42	95	0	206	45	18	19	16	1.85
1905763--1905792	12	2.5	12	100	0	60	0	0	6	93	0.35
1906145--1906186	15	2.6	16	81	7	50	69	2	9	19	1.28
1915473--1916366	445	2.0	445	97	0	1700	23	11	29	35	1.90
1925265--1925363	48	2.1	48	100	0	198	45	8	16	30	1.76
1936459--1936548	31	2.9	31	81	4	112	36	16	18	27	1.93
1940924--1940972	11	4.4	11	92	2	80	0	26	0	73	0.83
1940924--1940969	4	12.0	4	80	15	53	0	26	0	73	0.83
1940929--1940969	15	2.8	16	78	17	52	0	24	0	75	0.80
1942396--1942526	46	2.8	46	89	2	172	20	15	29	35	1.93
1942445--1942480	18	2.0	18	100	0	72	16	22	33	27	1.95
1943265--1943303	12	3.2	12	81	0	51	61	0	35	2	1.10
1948171--1948543	178	2.1	180	86	3	511	42	13	11	33	1.80
1948383--1949564	200	5.9	200	86	1	1555	41	14	12	32	1.82
1950063--1950125	18	3.6	18	86	4	83	25	33	4	36	1.77
1952265--1952294	15	2.0	15	93	0	51	30	6	13	50	1.67
1952633--1952669	6	6.2	6	93	0	65	32	0	16	51	1.45
1952628--1952669	18	2.3	18	91	0	66	28	2	14	54	1.52
1954350--1955464	199	5.6	199	86	3	1400	38	14	14	32	1.86
1954389--1955464	396	2.7	395	86	3	1447	38	14	14	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1956038--1956412	108	3.3	108	70	15	308	32	15	12	39	1.85
1955887--1956501	231	2.7	226	85	4	835	32	15	13	38	1.86
1957270--1957312	22	2.0	21	86	8	61	74	0	0	25	0.82
1959388--1959418	2	16.0	2	93	6	55	51	0	0	48	1.00
1969604--1969640	17	2.1	19	85	10	51	43	2	2	51	1.30
1973100--1973137	19	2.1	19	85	5	51	76	0	10	13	1.02
1973130--1973184	8	5.6	10	72	20	53	78	0	5	16	0.93
1973189--1973213	2	12.5	2	100	0	50	52	0	0	48	1.00
1973527--1973569	21	2.0	21	86	8	61	62	0	0	37	0.95
1974030--1974134	37	2.8	37	84	2	140	29	16	15	39	1.89
1974865--1976655	106	16.9	106	94	0	2965	23	18	24	34	1.96
1978017--1978083	10	6.5	11	77	16	56	0	11	5	82	0.84
1978005--1978088	20	4.1	20	76	13	71	1	11	7	79	0.97
1978003--1978077	24	3.1	23	81	11	62	1	10	6	81	0.93
1978030--1978088	29	2.0	29	84	12	77	0	11	6	81	0.87
1982561--1982649	19	4.7	19	72	17	53	75	0	7	16	1.03
1982590--1982648	12	5.6	10	74	18	57	77	0	5	16	0.93
1982626--1982655	4	7.2	4	92	7	51	73	0	3	23	0.98
1982766--1982809	21	2.1	21	83	8	54	70	2	0	27	0.99
1982943--1982972	2	15.0	2	100	0	60	50	0	0	50	1.00
1983513--1983617	37	2.8	37	86	0	147	29	16	15	39	1.89
1983642--1983995	131	2.7	133	81	6	380	25	16	29	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1984093--1984210	32	3.5	32	68	10	83	35	11	19	33	1.88
1983994--1984397	69	5.9	69	90	2	611	39	13	17	29	1.88
1983994--1984397	136	3.0	138	89	2	620	39	13	17	29	1.88
1984260--1984377	37	3.3	37	67	9	109	38	12	16	33	1.86
1984281--1984392	37	3.1	36	66	14	97	41	15	16	27	1.88
1991868--1991907	22	1.9	22	85	10	57	25	2	0	72	0.97
1993060--1993119	3	20.7	3	88	6	88	68	0	0	31	0.90
1993058--1993114	23	2.5	23	94	0	96	68	0	0	31	0.90
1995915--1996065	2	77.5	2	77	10	116	41	4	0	52	1.27
1996264--1996306	5	8.6	5	82	10	52	32	0	0	67	0.91
1996301--1996359	17	3.5	17	81	9	59	15	6	0	77	0.96
1996276--1996360	5	16.8	5	78	16	59	21	4	0	74	1.00
2000418--2000719	99	3.1	99	92	0	487	32	15	18	33	1.93
2001897--2002036	58	2.5	57	87	3	194	32	23	16	27	1.96
2001955--2002178	110	1.9	112	85	9	299	34	24	16	25	1.95
2003156--2003263	5	21.2	5	72	21	57	20	6	0	72	1.13
2003189--2003239	11	4.4	11	75	20	50	15	7	0	76	1.00
2003186--2003262	30	2.8	27	84	11	86	16	9	0	74	1.07

Tables:   1   2   3   4   5   6   7   8   9   10

The End!