genome.fa.s8746.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008746.1 Hibiscus syriacus cultivar Beakdansim tig00111835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2013901

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889643--889694	20	2.6	20	84	0	68	32	25	19	23	1.97
890209--890247	20	2.0	20	85	10	53	30	10	30	28	1.90
891466--891665	74	2.7	73	92	3	328	25	30	25	19	1.98
892187--892222	16	2.2	16	100	0	72	30	11	27	30	1.91
899062--899102	18	2.3	18	87	8	57	46	17	34	2	1.61
902077--902136	23	2.6	23	83	0	84	51	5	1	41	1.33
902172--902232	23	2.7	23	73	19	56	54	1	3	40	1.27
902485--902548	24	2.6	24	90	5	92	17	6	14	62	1.51
902497--902587	38	2.4	38	84	0	110	16	8	12	62	1.53
902512--902587	24	3.2	24	84	3	91	17	9	11	61	1.55
902503--902588	14	6.7	14	71	20	71	17	9	11	61	1.55
902854--902940	10	8.1	10	73	14	75	11	8	17	63	1.51
902854--902940	23	3.9	23	80	8	99	11	8	17	63	1.51
902837--902940	33	3.2	33	76	14	108	9	6	19	64	1.45
904649--904707	31	1.9	31	96	0	109	42	8	6	42	1.61
905082--905107	13	2.0	13	100	0	52	38	0	7	53	1.30
910863--910887	6	4.2	6	100	0	50	32	16	52	0	1.44
912005--912047	21	2.0	21	100	0	86	51	0	0	48	1.00
912007--912047	2	21.0	2	95	5	75	51	0	0	48	1.00
912036--912076	20	2.0	20	85	9	55	36	0	26	36	1.57
913967--914008	20	2.0	20	86	4	57	66	19	2	11	1.34
918712--918764	14	3.5	14	72	18	52	58	7	0	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
918725--918775	18	3.1	18	67	21	56	56	15	0	27	1.39
918712--918962	32	9.1	31	72	26	201	52	13	0	32	1.47
918783--918825	22	2.0	22	100	0	86	51	13	0	34	1.42
918726--918936	102	2.1	100	81	8	239	52	14	0	32	1.49
918785--918833	22	2.2	22	88	3	71	55	14	0	30	1.40
918753--918959	54	4.0	53	86	11	311	51	14	0	33	1.49
918837--918926	22	3.9	22	80	11	117	51	16	0	32	1.45
918859--919006	80	1.9	80	100	0	296	51	16	0	31	1.50
918783--919007	102	2.2	99	85	7	317	51	15	0	32	1.47
919386--919425	20	1.9	21	85	10	55	37	37	10	15	1.80
920008--920459	32	15.4	32	66	26	220	51	13	0	33	1.47
919991--920360	54	6.7	54	82	7	311	51	14	1	32	1.50
919990--920069	22	4.4	18	66	20	51	52	13	0	33	1.41
920072--920114	22	2.0	22	100	0	86	51	13	0	34	1.42
920074--920122	22	2.2	22	88	3	71	55	14	0	30	1.40
920126--920167	22	1.9	22	100	0	84	50	14	0	35	1.43
919991--920459	134	3.4	136	90	7	690	51	13	0	33	1.47
920099--920360	80	3.2	80	80	11	289	51	15	1	32	1.51
920206--920248	22	2.0	22	100	0	86	51	13	0	34	1.42
920208--920256	22	2.2	22	88	3	71	55	14	0	30	1.40
920040--920459	188	2.2	186	92	3	682	51	13	0	34	1.48
920260--920302	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920262--920310	22	2.2	22	88	3	71	55	14	0	30	1.40
920318--920391	22	3.2	22	73	19	62	52	17	1	28	1.53
920385--920431	22	2.1	22	88	7	69	57	6	0	36	1.24
920040--920459	54	7.8	53	81	11	317	51	13	0	34	1.48
920394--920436	22	2.0	22	95	0	77	53	11	0	34	1.37
920439--920474	14	2.5	15	95	4	65	61	0	0	38	0.96
920392--920486	22	4.2	22	68	13	68	52	9	0	37	1.34
920482--920526	15	3.0	15	93	0	72	48	0	0	51	1.00
920413--920549	52	2.9	47	79	15	158	51	5	0	42	1.26
922066--922150	41	2.1	41	84	0	107	48	8	12	30	1.71
926583--926624	21	2.0	21	85	0	57	26	11	26	35	1.91
927007--927057	26	2.0	26	84	3	68	27	9	5	56	1.54
930093--930130	18	2.1	18	95	0	67	60	5	0	34	1.19
932035--932074	17	2.3	18	86	4	64	62	12	0	25	1.30
932538--932631	21	4.5	21	73	15	79	35	21	17	26	1.95
932600--932653	20	2.6	21	83	13	67	33	16	22	27	1.95
938633--938674	20	2.1	20	82	8	50	42	4	14	38	1.66
938669--938706	18	2.1	18	90	0	58	55	2	5	36	1.37
946911--947271	90	4.0	90	91	1	562	44	7	10	37	1.67
953024--953079	28	2.0	28	82	3	69	39	3	1	55	1.28
956504--956529	2	13.0	2	100	0	52	50	0	0	50	1.00
956559--956597	17	2.3	17	86	0	51	20	2	5	71	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956886--957148	138	1.9	139	85	4	372	46	7	9	37	1.64
957299--957705	180	2.3	179	80	6	450	38	11	9	40	1.73
959831--960025	38	5.0	38	83	4	255	30	29	18	21	1.97
959830--960024	40	5.0	40	84	4	272	30	29	18	21	1.97
959830--960024	78	2.5	78	91	0	309	30	29	18	21	1.97
964005--964052	24	2.0	24	100	0	96	33	20	20	25	1.97
965236--965269	16	2.1	17	88	5	52	41	17	0	41	1.50
966077--966323	78	3.2	78	83	2	329	29	27	19	23	1.98
966077--966324	38	6.4	40	82	4	314	29	27	19	23	1.98
980708--980787	29	2.7	29	76	5	81	32	21	2	43	1.66
985115--985149	15	2.2	16	90	5	54	51	0	14	34	1.42
987700--987729	7	4.3	7	100	0	60	30	13	13	43	1.82
988477--988541	30	2.2	30	82	0	76	23	12	27	36	1.90
988939--988988	24	2.2	24	85	7	68	36	6	10	48	1.61
990331--990379	23	2.1	23	88	7	73	20	10	22	46	1.80
990387--990420	16	2.1	17	88	5	52	76	2	0	20	0.92
990651--990728	39	2.0	41	90	10	126	20	11	8	58	1.59
992008--992046	15	2.6	16	84	15	57	15	5	17	61	1.51
992229--992259	16	1.9	16	100	0	62	45	12	3	38	1.59
994955--995027	32	2.3	32	80	0	92	35	15	16	32	1.90
997199--997556	161	2.2	163	83	3	456	25	34	3	36	1.74
998302--998392	7	12.3	7	74	14	58	9	3	6	80	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998303--998376	16	4.8	16	79	14	84	12	1	6	79	0.98
998320--998392	14	5.1	14	80	9	85	9	4	5	80	0.99
998329--998396	21	3.5	21	71	19	65	10	4	4	80	0.98
998303--998394	14	6.1	15	77	13	82	10	3	6	79	1.03
998391--998443	27	1.9	28	88	3	81	24	1	13	60	1.43
998488--998560	25	3.0	25	87	2	103	13	6	6	72	1.26
1005582--1005693	61	1.9	58	90	5	179	23	16	6	54	1.64
1005582--1005701	58	2.0	60	88	4	181	25	16	6	51	1.68
1006695--1006727	16	2.1	16	94	0	57	48	12	15	24	1.78
1007308--1007348	21	1.9	22	90	5	66	46	12	0	41	1.41
1007318--1007399	32	2.6	32	76	1	94	50	8	1	40	1.41
1009990--1010053	15	4.3	15	85	0	83	42	6	14	37	1.70
1010003--1010069	30	2.3	30	89	2	91	43	7	13	35	1.72
1009984--1010069	45	1.9	44	86	6	120	45	6	12	34	1.69
1010052--1010121	20	3.5	20	90	0	113	42	10	11	35	1.74
1010279--1010342	28	2.3	27	84	13	76	51	1	1	45	1.20
1010294--1010375	31	2.6	32	77	14	82	52	2	0	45	1.14
1010395--1010438	22	2.0	23	86	4	63	54	0	0	45	0.99
1010399--1010455	21	2.6	22	81	10	64	52	0	0	47	1.00
1010335--1010455	54	2.3	51	77	19	133	50	0	0	47	1.12
1010644--1010763	42	2.9	42	96	0	213	45	17	20	16	1.86
1011541--1011565	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012720--1012752	3	11.0	3	100	0	66	33	0	0	66	0.92
1014812--1014868	2	29.0	2	96	3	107	50	0	0	49	1.00
1014928--1014958	12	2.6	12	94	0	53	29	48	12	9	1.73
1018571--1018618	23	2.1	23	88	0	69	35	12	18	33	1.89
1019037--1019109	23	3.2	23	90	0	110	39	21	5	32	1.77
1018685--1020599	429	4.5	431	96	0	3529	39	12	7	41	1.71
1019478--1019540	23	2.7	23	92	0	99	38	20	4	36	1.74
1019907--1019969	23	2.7	23	92	0	99	38	20	4	36	1.74
1020336--1020398	23	2.7	23	92	0	99	38	20	4	36	1.74
1020815--1020901	39	2.2	39	95	0	156	17	13	20	48	1.81

Tables:   1   2   3   4   5   6   7   8   9   10