genome.fa.s8746.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008746.1 Hibiscus syriacus cultivar Beakdansim tig00111835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2013901

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280853--280955	42	2.4	43	85	1	136	23	21	19	35	1.96
281128--281160	2	16.5	2	100	0	66	48	0	0	51	1.00
285534--285605	33	2.2	33	92	0	117	26	12	26	34	1.92
291498--291534	14	2.6	14	100	0	74	35	0	0	64	0.94
301932--301967	17	2.0	17	89	10	54	11	2	5	80	0.98
303854--303879	2	13.0	2	100	0	52	50	0	0	50	1.00
304793--304886	47	2.0	47	97	0	179	34	30	10	24	1.89
311778--311822	18	2.5	18	100	0	90	35	6	15	42	1.73
313366--313436	32	2.2	32	97	0	133	47	12	19	19	1.81
316829--316885	27	2.1	27	100	0	114	21	28	10	40	1.86
317487--317624	68	2.0	68	90	0	213	29	15	10	44	1.79
319635--319769	66	2.0	66	100	0	270	40	1	10	47	1.47
322630--322702	24	3.0	24	83	4	92	17	12	13	56	1.68
322656--322704	10	4.5	10	76	18	53	18	14	10	57	1.65
323006--323045	20	2.0	20	90	0	62	7	10	25	57	1.57
325860--326242	108	3.4	109	72	8	340	38	13	16	31	1.87
325781--326387	226	2.7	225	86	2	824	38	13	15	32	1.87
326716--327060	177	1.9	178	84	8	461	33	13	13	39	1.84
330806--330859	23	2.3	23	74	0	54	24	16	33	25	1.96
336898--336926	8	3.6	8	100	0	58	55	10	0	34	1.34
338479--338503	10	2.5	10	100	0	50	72	8	0	20	1.10
338843--339012	30	5.7	30	74	4	101	60	7	12	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338949--339040	30	3.1	30	83	9	107	57	5	14	22	1.57
338799--339033	60	3.9	60	74	2	186	58	8	13	20	1.59
339860--340128	129	2.1	129	80	8	305	25	18	24	32	1.97
339860--340114	43	5.9	43	84	2	253	24	17	24	33	1.96
341125--341156	14	2.3	14	94	0	55	46	18	18	15	1.84
348761--348892	40	3.2	41	69	16	110	31	18	12	36	1.89
350350--350467	42	2.8	42	83	3	132	26	27	16	29	1.97
350574--350672	37	2.5	38	82	9	119	25	24	15	35	1.94
350820--350923	42	2.5	43	85	4	140	26	23	17	32	1.96
350235--351120	246	3.6	246	87	3	1190	28	22	16	33	1.95
351715--351789	35	2.1	36	85	9	100	48	1	2	48	1.24
351935--351972	20	1.9	20	88	0	58	21	26	10	42	1.85
352612--352659	3	16.0	3	82	8	62	68	4	0	27	1.07
352843--353163	134	2.4	133	85	2	419	24	16	31	27	1.96
352843--353179	133	2.5	134	84	0	433	24	16	31	27	1.97
353209--353333	65	1.9	66	86	4	182	43	15	20	21	1.88
353656--353744	30	3.0	29	81	4	108	41	8	14	34	1.77
353851--353922	36	2.0	36	91	0	117	37	11	22	29	1.88
359336--359387	21	2.5	21	81	12	70	61	5	13	19	1.52
359452--359529	30	2.6	29	83	4	93	56	8	12	21	1.64
360783--360853	3	24.0	3	97	2	135	66	0	0	33	0.92
361219--361744	200	2.7	197	81	5	589	30	18	12	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362774--362819	21	2.2	21	84	0	56	43	2	8	45	1.47
363863--363899	20	1.9	19	89	10	58	45	10	24	18	1.81
367465--368221	380	2.0	380	95	0	1352	17	29	27	24	1.98
372303--372343	21	2.0	21	85	9	57	29	4	29	36	1.78
372609--372670	2	31.5	2	96	3	117	50	0	0	50	1.00
374986--375038	29	1.9	27	85	11	72	50	0	13	35	1.41
375130--375173	18	2.6	18	82	7	56	43	6	4	45	1.51
375166--375237	25	2.7	27	78	6	85	50	0	0	50	1.00
375202--375239	16	2.4	16	82	13	51	47	0	0	52	1.00
375345--375398	19	2.8	19	82	0	72	55	1	0	42	1.10
375582--375692	51	2.2	51	85	3	152	49	9	8	32	1.65
375711--376077	190	1.9	190	85	3	506	27	23	11	37	1.90
378335--378369	18	1.9	18	94	0	61	22	2	25	48	1.64
380349--380396	24	2.0	24	100	0	96	29	8	16	45	1.76
380422--380490	7	9.4	7	86	9	66	26	0	0	73	0.83
380423--380502	10	8.0	10	77	12	76	26	0	0	73	0.83
380434--380502	3	21.7	3	83	16	86	28	0	0	71	0.87
383447--383472	11	2.4	11	100	0	52	30	7	7	53	1.57
389118--389218	22	4.6	22	93	0	157	33	14	11	39	1.83
389872--390130	141	1.8	141	93	0	446	33	15	21	29	1.94
391018--391079	24	2.6	24	92	0	106	58	24	16	1	1.47
391923--391957	11	3.3	11	92	4	54	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391991--392300	157	2.0	156	84	3	408	38	6	6	48	1.55
394978--395121	37	3.8	37	80	11	143	44	4	7	43	1.54
395099--395143	22	2.0	22	100	0	90	44	4	4	46	1.43
395025--395218	96	2.0	97	89	5	295	45	5	6	42	1.52
395062--395177	59	2.0	59	88	6	173	45	4	6	43	1.48
395121--395308	37	5.1	37	83	6	238	42	4	6	46	1.52
394989--395247	133	1.9	135	85	3	362	43	5	7	43	1.56
395121--395308	75	2.5	74	87	3	261	42	4	6	46	1.52
395286--395373	32	2.7	32	91	6	142	50	3	5	40	1.43
395334--395424	41	2.3	38	81	9	119	48	2	4	45	1.34
395448--395496	3	15.7	3	87	8	71	28	2	0	69	1.00
395439--395499	6	9.8	6	85	3	50	26	1	0	72	0.94
396554--396669	9	12.8	9	68	24	59	19	3	2	74	1.09
396554--396616	5	12.8	5	72	21	53	19	4	0	76	0.96
396600--396722	38	3.3	38	72	11	103	21	2	4	71	1.14
399306--399501	90	2.1	91	86	5	268	35	16	15	31	1.91
400497--401135	110	5.5	110	72	12	501	32	23	17	26	1.97
400505--401303	240	3.3	240	89	3	1136	32	23	17	26	1.97
401205--401454	124	2.0	124	87	1	358	33	25	16	24	1.96
401500--401854	84	4.2	84	85	2	471	31	26	17	24	1.97
401501--401894	168	2.3	168	86	1	558	32	25	17	24	1.97
401500--401894	84	4.7	84	82	2	461	32	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402558--403025	38	12.6	37	78	11	412	43	4	6	44	1.52
402572--402912	74	4.6	73	87	3	434	43	5	7	43	1.55
402846--402905	12	4.8	12	70	22	52	43	5	6	45	1.52
402940--403038	41	2.5	40	83	6	119	47	2	4	46	1.32
402839--403023	106	1.8	100	81	8	228	43	3	5	47	1.44
402947--403039	42	2.3	42	86	3	127	48	2	3	46	1.30
404171--404320	4	36.2	4	68	25	57	22	2	3	72	1.09
404174--404334	9	18.3	9	71	18	69	21	1	3	72	1.10
404190--404242	11	4.7	11	80	17	56	20	3	0	75	0.96
404190--404250	11	5.4	11	80	16	54	19	3	0	77	0.91
404174--404341	26	6.3	26	68	16	78	20	1	4	73	1.10
404278--404322	23	1.9	24	86	4	65	26	0	2	71	0.98
404226--404320	35	2.7	34	78	12	86	22	1	4	72	1.08
404276--404341	27	2.3	28	84	10	80	21	0	4	74	1.00
405668--405709	15	2.8	15	100	0	84	45	7	0	47	1.30
407105--407161	28	1.9	29	82	10	71	15	7	5	71	1.25
407621--407656	12	3.0	12	87	0	54	22	2	8	66	1.31
412959--413092	60	2.2	60	85	1	180	49	1	10	38	1.46
412992--413085	29	3.2	29	70	16	84	51	0	7	41	1.30
414083--414188	32	3.4	32	87	5	137	16	17	12	53	1.72
414255--414449	98	2.0	99	91	3	322	50	12	6	30	1.65
419219--419270	27	2.0	25	85	7	68	5	17	7	69	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432262--432288	2	13.5	2	100	0	54	48	0	0	51	1.00
435774--435816	23	1.9	22	90	4	68	23	0	4	72	1.04
438345--438413	34	2.0	34	100	0	138	36	23	2	37	1.70
440554--440642	46	2.0	46	93	2	153	26	17	26	28	1.98
441036--441075	19	2.0	20	85	9	55	25	37	0	37	1.56
448871--448919	19	2.6	19	81	9	57	28	20	22	28	1.98
448838--448928	45	2.0	46	86	2	130	27	18	24	29	1.98
448948--448986	20	2.0	20	89	0	60	20	15	33	30	1.94
452238--452284	24	2.0	24	86	0	67	29	36	12	21	1.91
454808--454870	20	3.1	20	93	4	108	17	39	28	14	1.89

Tables:   1   2   3   4   5   6   7   8   9   10