genome.fa.s8752.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008752.1 Hibiscus syriacus cultivar Beakdansim tig00111843_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1143363

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 674 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569203--569227	11	2.3	11	100	0	50	68	0	0	32	0.90
570394--570436	3	15.0	3	81	18	56	65	0	0	34	0.93
570394--570440	14	3.4	14	86	13	71	65	0	0	34	0.93
570748--570953	42	4.8	43	91	0	308	29	22	21	26	1.99
571629--571705	22	3.5	22	94	0	127	44	9	12	33	1.75
572430--572516	40	2.2	40	85	4	113	27	14	14	42	1.86
576718--576804	30	3.1	29	82	9	101	62	5	12	19	1.50
577528--577557	11	2.9	10	90	9	51	80	0	10	10	0.92
578714--578821	50	2.1	50	96	1	198	42	5	12	39	1.65
578730--578837	50	2.2	50	87	0	153	40	11	10	37	1.75
578958--578999	18	2.2	18	87	12	57	66	0	2	30	1.04
580564--580619	3	19.0	3	82	10	71	64	1	1	32	1.14
583516--583765	136	1.8	136	82	3	324	33	23	18	25	1.97
584375--584458	3	28.3	3	95	2	152	33	1	0	65	1.00
584903--584953	22	2.2	25	82	10	63	52	23	5	17	1.66
584910--584954	25	1.9	22	86	13	63	51	26	4	17	1.65
592790--592835	21	2.2	21	84	7	58	39	2	0	58	1.10
592841--592870	16	1.9	16	93	6	53	53	0	0	46	1.00
592858--592912	11	4.6	11	80	13	56	43	7	0	49	1.30
597018--597062	21	2.2	21	92	4	74	42	15	22	20	1.89
599463--599497	18	1.9	18	88	11	54	54	5	17	22	1.64
600363--600656	149	2.0	149	99	0	579	27	17	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600643--600687	23	2.0	23	86	0	63	20	24	28	26	1.99
608487--608519	16	2.1	16	100	0	66	57	24	12	6	1.57
608584--608614	10	3.1	10	100	0	62	61	19	9	9	1.54
608601--608644	16	2.8	16	92	0	70	61	18	9	11	1.55
616197--616229	6	5.5	6	92	0	57	48	0	0	51	1.00
616187--616227	18	2.3	18	86	0	55	51	0	0	48	1.00
616197--616240	18	2.4	18	88	7	63	45	0	0	54	0.99
616197--616254	24	2.4	23	81	16	57	43	0	1	55	1.10
617267--617333	34	2.0	34	82	11	84	56	1	2	38	1.24
618447--618529	42	2.0	42	92	0	139	30	27	14	27	1.95
618473--618590	61	1.9	62	82	5	150	28	26	16	28	1.97
618593--618661	20	3.5	20	95	0	120	44	21	14	18	1.85
618808--618858	22	2.3	22	93	0	84	17	47	19	15	1.83
619193--619231	20	2.0	20	94	0	69	48	20	15	15	1.81
619239--619325	20	4.4	19	78	8	93	16	14	18	50	1.78
619241--619331	40	2.3	40	84	0	128	16	14	17	51	1.76
620771--620867	42	2.3	42	90	0	149	29	37	16	16	1.91
620982--621031	21	2.4	21	82	0	64	20	14	32	34	1.92
621440--621515	21	3.6	21	87	0	107	22	35	18	23	1.96
623007--623061	20	2.8	20	91	0	83	45	21	14	18	1.85
623057--623141	20	4.2	20	77	5	91	14	16	22	47	1.82
623382--623417	18	2.0	18	94	0	63	19	2	22	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625638--625691	24	2.2	24	87	6	74	44	20	14	20	1.86
625817--625850	12	2.8	12	90	0	50	14	0	29	55	1.40
626441--626477	16	2.4	16	86	8	51	64	0	5	29	1.15
626628--626900	20	13.4	21	70	13	135	31	11	24	31	1.91
626680--626900	103	2.1	102	82	11	272	30	10	25	32	1.90
626851--626924	20	3.6	21	85	7	98	21	9	32	36	1.86
626723--626924	21	9.8	21	73	13	127	27	11	27	33	1.91
630163--630270	32	3.4	31	83	5	126	31	12	5	50	1.62
631478--631510	2	16.5	2	100	0	66	51	0	0	48	1.00
631502--631541	20	2.1	19	85	4	53	65	2	7	25	1.32
633311--633663	106	3.3	106	90	2	519	22	17	25	33	1.96
636865--637124	134	1.9	134	94	1	459	29	21	25	23	1.99
645403--645434	2	16.5	2	93	6	57	53	0	0	46	1.00
652304--652352	14	3.5	15	76	18	52	30	0	2	67	1.02
652975--653018	21	2.0	21	86	4	61	25	31	25	18	1.97
653014--653055	11	3.8	11	90	0	66	30	21	16	30	1.95
653778--653847	25	2.8	25	73	16	81	28	24	24	22	1.99
658860--658905	21	2.1	23	84	8	60	30	32	21	15	1.94
659578--659652	25	3.0	25	74	14	82	28	24	24	24	2.00
659862--659901	19	2.0	21	85	9	57	35	15	7	42	1.75
661774--661803	14	2.2	13	94	5	51	36	13	0	50	1.42
664182--664231	23	2.2	23	82	7	57	26	6	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668352--668413	25	2.5	25	89	0	97	48	3	11	37	1.55
668352--668413	12	4.9	13	78	7	74	48	3	11	37	1.55
668352--668414	13	5.0	13	78	7	67	49	3	11	36	1.54
668438--668478	18	2.2	19	91	8	66	68	14	0	17	1.22
672707--672811	22	4.9	22	81	9	119	30	28	18	22	1.97
672774--672810	18	2.1	18	94	0	65	27	29	21	21	1.99
675408--675460	19	2.8	19	97	0	97	18	22	28	30	1.98
675492--675556	19	3.4	19	91	0	103	15	18	33	32	1.92
680115--680282	20	7.7	20	73	17	138	44	11	24	19	1.84
680053--680295	46	5.3	46	91	5	386	46	11	21	19	1.82
680053--680298	88	2.7	88	91	5	384	47	11	21	19	1.81
680053--680295	20	10.5	26	67	26	131	46	11	21	19	1.82
683022--683078	30	1.9	30	88	0	87	56	8	1	33	1.41
683053--683100	21	2.3	20	85	3	60	56	4	2	37	1.30
683117--683150	17	2.0	17	88	0	50	61	0	2	35	1.11
685581--685678	28	3.5	28	69	14	76	36	3	11	48	1.54
685665--685730	29	2.4	28	80	12	73	27	1	15	56	1.48
685786--685818	16	2.1	16	88	11	50	27	3	0	69	1.03
688297--688462	85	2.0	85	85	4	228	31	18	19	30	1.96
688434--688498	26	2.5	26	80	5	78	35	16	20	27	1.94
688297--688484	85	2.2	85	83	7	224	31	18	19	30	1.96
688434--688498	13	5.0	13	80	0	67	35	16	20	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693202--693377	20	7.9	20	74	18	120	45	9	21	23	1.81
693189--693843	46	14.3	45	82	9	405	46	10	21	21	1.80
693189--693317	20	5.5	25	71	20	107	48	9	19	22	1.77
693322--693529	20	9.4	20	70	21	114	44	10	22	22	1.83
693470--693765	72	4.2	72	76	14	319	47	10	21	20	1.80
693424--693671	118	2.1	118	90	1	381	47	11	20	20	1.80
693222--693717	164	3.1	163	85	5	611	47	10	20	21	1.80
693189--693769	210	2.8	202	84	6	733	47	10	20	22	1.80
693614--693738	20	5.7	20	68	22	72	47	9	24	18	1.78
693467--693719	118	2.1	114	82	9	287	48	10	21	19	1.79
696823--696867	16	2.8	16	79	0	54	20	8	0	71	1.12
696857--696895	16	2.5	15	91	4	60	35	7	0	56	1.28
705974--706013	5	8.0	5	100	0	80	80	0	0	20	0.72
706436--706518	29	2.8	31	78	10	109	56	10	9	22	1.62
706436--706521	30	2.9	30	81	8	113	58	10	9	22	1.60
709592--709624	7	4.7	7	100	0	66	54	30	15	0	1.41
709936--709988	3	19.0	3	85	14	69	30	0	1	67	1.01
709932--709988	19	3.0	19	80	14	73	29	0	1	68	1.00
709943--709987	16	2.8	16	82	0	63	28	0	2	68	1.01
709926--709981	29	2.0	29	90	10	91	25	0	3	71	1.02
711816--711841	2	13.0	2	100	0	52	50	0	0	50	1.00
713772--713855	43	1.9	44	87	2	125	33	11	22	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714009--714044	14	2.6	14	86	0	54	30	13	2	52	1.55
714129--714167	14	2.8	14	84	0	51	25	12	7	53	1.65
717690--717770	21	4.3	19	77	19	80	80	0	17	2	0.82
717702--717767	17	3.9	15	79	20	60	81	0	15	3	0.80
717674--717769	35	2.7	35	84	9	106	77	0	19	3	0.91
721150--721323	70	2.4	72	84	6	219	34	15	20	29	1.93
723280--724052	123	6.4	123	85	7	987	38	14	20	26	1.91
723076--723973	358	2.5	359	90	3	1423	39	14	19	26	1.90
724308--724351	3	16.0	3	82	17	51	29	0	2	68	1.02
724305--724359	16	3.6	16	80	7	62	32	0	1	65	1.03

Tables:   1   2   3   4   5   6