genome.fa.s8752.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008752.1 Hibiscus syriacus cultivar Beakdansim tig00111843_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1143363

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 674 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006385--1006431	23	2.0	23	84	8	60	61	0	34	4	1.15
1007108--1007182	38	2.0	38	97	0	141	34	12	2	50	1.53
1011087--1011176	46	2.0	44	89	4	135	25	17	26	30	1.98
1011196--1011234	20	2.0	20	89	0	60	20	15	33	30	1.94
1013859--1013926	24	2.9	24	95	2	120	33	20	23	22	1.97
1017535--1017574	21	1.9	21	85	10	55	35	10	2	52	1.48
1019534--1019675	64	2.2	64	83	12	168	29	13	24	32	1.93
1020001--1020040	19	2.0	20	85	9	55	25	37	0	37	1.56
1026164--1026203	21	1.9	21	85	10	55	35	10	2	52	1.48
1032608--1032648	12	3.4	12	87	9	57	78	0	0	21	0.76
1032605--1032648	13	3.1	16	75	24	53	77	0	0	22	0.77
1060721--1060814	3	31.0	3	84	2	125	40	0	0	59	0.97
1060925--1060959	16	2.2	16	95	5	63	8	57	14	20	1.63
1062738--1062788	20	2.4	21	77	12	59	35	1	0	62	1.06
1073362--1073413	6	9.2	6	76	19	58	80	0	19	0	0.71
1073364--1073413	16	3.0	16	88	5	73	82	0	18	0	0.68
1073376--1073413	9	4.0	10	83	10	53	78	0	21	0	0.74
1073368--1073410	22	2.0	22	86	9	61	81	0	18	0	0.69
1074545--1074773	83	2.8	83	95	1	406	26	13	22	37	1.92
1075524--1076164	113	5.6	113	81	9	700	38	13	19	29	1.90
1075505--1076054	113	4.9	111	86	5	711	36	13	18	30	1.90
1075505--1076164	222	2.9	222	83	7	778	37	13	19	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076104--1076212	42	2.7	41	95	2	193	47	11	22	18	1.80
1076461--1076546	3	29.0	3	84	2	111	40	0	0	59	0.97
1076461--1076574	9	13.1	9	74	10	69	44	0	0	54	1.06
1076454--1076544	41	2.2	42	88	3	125	40	0	0	59	0.97
1076651--1076692	16	2.7	16	88	3	59	11	50	19	19	1.78
1076663--1076702	16	2.6	16	96	4	73	7	57	17	17	1.62
1078425--1078451	6	4.5	6	100	0	54	51	0	0	48	1.00
1078741--1078782	19	2.2	20	86	4	59	54	4	4	35	1.42
1082815--1082854	20	2.0	20	100	0	80	25	15	20	40	1.90
1083081--1083111	16	1.9	16	93	0	53	29	0	3	67	1.06
1083301--1083325	12	2.1	12	100	0	50	56	0	8	36	1.29
1084824--1084917	22	4.1	23	71	21	65	37	3	5	54	1.39
1084867--1084927	26	2.4	25	78	7	70	36	1	4	57	1.30
1084901--1084966	29	2.3	28	75	14	64	36	4	3	56	1.35
1086236--1086283	24	2.0	23	84	11	62	25	2	4	68	1.18
1086376--1086438	32	2.1	28	83	16	83	20	4	11	63	1.45
1088963--1089158	75	2.6	76	86	4	263	20	23	32	22	1.98
1091753--1091792	21	1.9	21	89	0	62	10	25	40	25	1.86
1097584--1097782	75	2.6	75	84	2	247	21	24	31	23	1.98
1099755--1099797	21	2.0	21	81	0	50	27	30	25	16	1.97
1100324--1100540	102	2.1	103	96	0	400	24	13	24	37	1.91
1100556--1100608	23	2.3	23	93	6	90	18	26	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100566--1100619	23	2.3	23	90	6	83	22	22	24	31	1.98
1106713--1106750	20	1.9	20	88	0	58	23	34	31	10	1.89
1107351--1107413	23	2.7	23	80	4	65	23	23	23	28	2.00
1112006--1112056	19	2.6	20	90	3	77	43	5	15	35	1.71
1118164--1118647	242	2.0	242	88	2	720	32	20	11	36	1.88
1118164--1118647	81	6.0	81	89	0	709	32	20	11	36	1.88
1118584--1118710	59	2.2	59	88	2	184	32	18	12	36	1.89
1118503--1118791	140	2.1	140	88	0	425	31	20	12	36	1.89
1118643--1118955	81	3.9	81	93	0	491	31	19	12	37	1.89
1118422--1118872	221	2.0	221	90	0	715	31	20	11	35	1.89
1118342--1118953	302	2.0	301	89	1	940	32	20	11	35	1.89
1121046--1121090	19	2.4	19	92	0	81	48	0	17	33	1.48
1124693--1124788	23	4.3	22	88	4	122	32	28	23	15	1.95
1125371--1125454	3	29.3	3	74	13	79	33	1	0	65	1.00
1126578--1126617	21	1.9	21	84	0	53	52	0	10	37	1.35
1126939--1126980	3	14.0	3	100	0	84	33	0	0	66	0.92
1127017--1127047	13	2.4	13	94	0	53	9	0	3	87	0.66
1127014--1127048	7	5.1	7	89	6	54	11	0	2	85	0.69
1127873--1127911	13	3.1	13	81	7	53	20	0	2	76	0.90
1128757--1128828	36	2.0	36	88	0	108	41	18	11	29	1.84
1129282--1129368	43	2.0	44	86	2	122	32	10	24	33	1.89
1131690--1131807	21	5.8	20	88	3	146	22	20	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131887--1131944	30	2.0	29	90	10	91	44	17	5	32	1.70
1131887--1131946	29	2.0	30	93	6	104	43	16	6	33	1.74
1132399--1132436	20	1.9	20	94	0	67	39	10	7	42	1.69
1140316--1140524	54	3.9	53	88	1	294	39	15	21	24	1.91
1141410--1141613	104	2.0	103	90	4	322	39	13	21	26	1.90
1141755--1141794	17	2.4	17	91	4	64	50	5	22	22	1.68
1142044--1142123	3	28.0	3	75	14	80	31	1	0	67	0.99
1142044--1142123	17	4.6	17	79	13	83	31	1	0	67	0.99

Tables:   1   2   3   4   5   6

The End!