genome.fa.s8798.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008798.1 Hibiscus syriacus cultivar Beakdansim tig00111947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1825372

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1068 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254155--254204	19	2.7	19	84	3	57	26	6	0	68	1.13
258662--258707	12	3.6	12	81	16	56	45	17	19	17	1.85
258668--258708	12	3.1	13	80	19	57	46	14	17	21	1.84
260996--261035	21	1.9	21	94	0	71	30	15	7	47	1.72
261030--261128	33	3.0	33	94	1	164	32	7	15	45	1.73
261114--261168	13	4.2	13	75	13	58	34	3	12	49	1.59
261563--261617	14	3.6	14	77	15	56	32	12	12	41	1.81
261565--261614	15	3.2	15	78	10	55	36	10	12	42	1.76
261582--261614	17	1.9	17	100	0	66	39	12	12	36	1.80
261708--261739	16	2.0	17	88	11	50	43	21	21	12	1.86
265838--265986	74	2.0	74	100	0	298	34	18	13	32	1.90
266908--267077	88	1.9	87	88	3	252	37	18	6	37	1.77
272446--272480	18	1.9	18	100	0	70	17	40	25	17	1.90
275574--275610	16	2.4	16	90	4	58	32	5	2	59	1.34
288620--288722	22	4.7	22	86	4	129	26	31	25	17	1.97
288631--288702	23	3.2	23	88	2	101	23	34	23	18	1.96
295089--295116	13	2.2	13	100	0	56	85	7	0	7	0.73
299228--299664	239	1.8	239	91	0	730	25	25	35	13	1.93
304046--304101	18	3.1	18	79	5	76	50	10	23	16	1.76
304050--304111	18	3.4	17	76	12	61	56	12	17	12	1.67
305749--305776	12	2.3	12	100	0	56	28	32	10	28	1.90
306036--306107	36	2.0	36	97	0	135	22	22	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312235--312262	11	2.5	11	100	0	56	67	0	25	7	1.15
313049--313192	70	2.1	68	89	2	216	20	19	20	38	1.93
314519--314548	15	2.0	15	100	0	60	20	20	20	40	1.92
318103--318172	30	2.3	30	92	0	113	51	11	8	28	1.67
318885--318932	22	2.2	22	92	3	80	22	0	16	60	1.36
322783--322827	21	2.1	21	83	0	54	60	4	2	33	1.29
325531--325619	29	3.1	29	85	0	124	17	40	28	13	1.88
325826--325909	29	2.9	29	83	0	96	13	29	39	17	1.88
327212--327280	30	2.2	30	82	15	86	36	5	17	40	1.74
327221--327280	29	2.0	31	90	6	97	35	6	16	41	1.75
327357--327409	19	2.7	20	88	2	72	41	13	9	35	1.76
327357--327412	20	2.8	20	89	2	78	41	12	10	35	1.78
327519--327560	21	2.0	21	95	0	75	23	21	28	26	1.99
327589--327628	20	1.9	21	85	10	55	37	37	10	15	1.80
331108--331136	6	4.8	6	100	0	58	65	0	0	34	0.93
335879--335970	45	2.1	44	91	4	150	19	14	15	51	1.77
344248--344333	39	2.3	39	89	4	131	31	12	6	48	1.68
351098--351150	23	2.3	23	80	0	61	30	22	28	18	1.98
356118--356163	24	1.9	24	95	0	83	36	23	6	32	1.81
358911--359039	63	2.0	63	83	5	163	33	22	20	24	1.97
360942--360981	21	1.9	21	89	0	62	55	7	7	30	1.56
365683--365835	65	2.4	65	82	7	170	31	22	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366422--366450	14	2.1	14	100	0	58	37	20	20	20	1.94
369174--369230	3	18.3	3	80	7	60	38	0	1	59	1.08
369174--369237	21	2.9	21	80	15	76	40	0	1	57	1.08
370793--371007	111	1.9	111	83	3	272	38	10	10	40	1.74
373582--373624	22	2.0	22	86	9	61	16	16	4	62	1.48
376131--376164	14	2.4	14	90	0	50	91	5	2	0	0.51
378412--378634	114	2.0	114	89	0	347	34	14	19	31	1.92
381021--381104	22	4.0	21	83	7	89	36	9	14	39	1.78
381784--381971	76	2.5	76	95	0	340	23	21	20	35	1.96
381913--382026	45	2.5	45	88	2	174	21	22	22	32	1.98
381958--382167	76	2.8	76	93	2	359	21	20	21	35	1.96
381837--382092	121	2.1	121	97	0	476	22	21	21	34	1.97
382110--382210	43	2.3	45	91	3	161	21	22	20	34	1.97
382034--382286	119	2.1	121	94	1	447	21	21	21	35	1.96
382155--382558	76	5.3	76	95	1	697	22	20	21	35	1.96
381784--382362	195	3.0	196	95	0	1043	21	21	21	34	1.97
382715--382780	3	21.3	3	83	6	78	37	0	1	60	1.06
382741--382787	21	2.2	20	85	14	60	38	0	2	59	1.09
384357--384571	111	1.9	111	82	3	263	38	10	10	40	1.73
390880--390943	11	5.6	12	70	15	55	53	0	0	46	1.00
390641--390933	147	2.0	150	82	7	357	46	7	6	39	1.58
390908--390982	24	2.9	28	75	20	83	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390661--390974	148	2.1	144	79	13	309	47	7	5	39	1.54
390916--390986	27	2.6	26	82	12	81	59	0	0	40	0.98
391808--391857	22	2.2	23	86	10	68	2	28	8	62	1.35
392228--392281	3	19.0	3	83	11	60	62	0	0	37	0.95
392258--392284	8	3.4	8	100	0	54	74	0	0	25	0.83
392228--392281	11	4.8	12	80	11	60	62	0	0	37	0.95
392486--392917	122	3.6	123	86	5	557	26	17	15	41	1.88
392869--392969	50	2.0	50	100	0	202	21	19	9	48	1.78
392755--393083	164	2.0	164	90	2	518	27	18	13	40	1.88
392919--393226	114	2.7	114	96	0	562	26	20	15	37	1.92
393252--393378	36	3.5	36	72	2	128	38	12	18	30	1.88
393232--393376	73	2.0	73	95	0	263	35	13	20	31	1.90
394086--394161	22	3.5	22	76	7	73	36	10	18	34	1.85
396591--396911	114	2.8	114	93	0	543	31	19	16	32	1.94
404263--404312	22	2.2	23	86	10	68	2	28	8	62	1.35
404681--404734	3	19.0	3	83	11	60	62	0	0	37	0.95
404711--404737	8	3.4	8	100	0	54	74	0	0	25	0.83
404681--404734	11	4.8	12	80	11	60	62	0	0	37	0.95
404939--405370	122	3.6	123	86	5	557	26	17	15	41	1.89
405322--405422	50	2.0	50	100	0	202	21	19	9	48	1.78
405208--405536	164	2.0	164	90	2	518	27	18	13	40	1.88
405372--405679	114	2.7	114	95	0	544	27	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405705--405831	36	3.5	36	73	2	137	38	13	17	30	1.88
405685--405829	73	2.0	73	95	0	263	35	13	19	31	1.91
405867--406195	163	2.0	165	92	1	554	36	12	14	35	1.85
406702--406777	22	3.5	22	80	7	100	35	13	17	34	1.88
409209--409529	114	2.8	114	93	0	534	31	19	16	33	1.94
415590--415646	24	2.3	25	78	6	71	40	1	1	56	1.20
415657--415926	147	1.8	144	82	8	339	47	8	6	37	1.59
416760--416811	21	2.4	21	83	3	68	3	36	3	55	1.36
417591--417650	23	2.6	23	84	5	77	40	16	18	25	1.91
418578--418657	3	27.0	3	85	14	105	32	0	0	67	0.91
418579--418657	20	3.8	21	87	12	110	31	0	0	68	0.90
418578--418657	23	3.4	24	84	11	112	32	0	0	67	0.91
420515--420547	14	2.4	14	90	5	50	57	3	3	36	1.29
420793--420838	19	2.4	19	100	0	92	32	0	4	63	1.14
426204--426244	22	1.9	21	90	5	64	36	17	0	46	1.48
426237--426276	19	2.2	18	90	4	62	40	20	0	40	1.52
426705--426749	3	14.7	3	90	4	72	35	0	0	64	0.94
429088--429123	18	2.0	18	100	0	72	50	16	5	27	1.68
437713--437741	15	2.0	15	93	6	51	58	13	13	13	1.63
438017--438072	15	3.7	15	95	0	103	14	26	30	28	1.95
438632--438667	19	1.9	18	88	5	54	36	2	8	52	1.46
438632--438667	18	1.9	19	88	5	56	36	2	8	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439919--439956	19	2.0	19	89	0	58	50	0	13	36	1.42
446371--446399	15	2.0	15	93	6	51	58	13	13	13	1.63
446675--446709	15	2.3	15	100	0	70	14	22	34	28	1.93
448715--448759	22	2.2	20	88	11	65	35	8	24	31	1.86
453155--453181	7	3.9	7	100	0	54	14	14	14	55	1.70
464066--464102	19	2.0	18	89	5	56	56	10	5	27	1.55
466343--466377	15	2.2	16	90	5	54	57	0	0	42	0.99
466904--467193	85	3.4	84	80	5	316	33	18	22	25	1.97
466904--467193	42	6.9	42	83	4	323	33	18	22	25	1.97
469100--469154	24	2.3	24	93	0	92	56	12	16	14	1.68

Tables:   1   2   3   4   5   6   7   8   9