genome.fa.s8798.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008798.1 Hibiscus syriacus cultivar Beakdansim tig00111947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1825372

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1068 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066063--1066126	21	3.0	21	84	4	83	25	25	21	28	1.99
1066650--1066715	21	3.1	21	93	0	105	24	21	25	28	1.99
1066736--1066776	20	2.0	20	90	0	64	26	24	24	24	2.00
1071729--1071779	27	1.9	26	92	4	84	31	23	15	29	1.95
1072908--1072959	17	3.1	17	80	5	52	61	5	1	30	1.30
1073208--1073252	20	2.2	20	84	0	63	37	22	17	22	1.94
1073246--1073333	20	4.3	20	77	8	97	42	25	12	20	1.87
1073862--1073908	18	2.6	18	82	3	58	34	12	23	29	1.92
1073902--1073952	20	2.6	20	87	3	68	33	11	19	35	1.88
1073980--1074026	20	2.3	20	88	0	67	23	17	23	36	1.95
1074914--1074939	12	2.2	12	100	0	52	42	42	0	15	1.47
1078453--1078661	101	2.0	102	90	3	330	43	8	11	36	1.72
1078453--1078661	105	2.0	101	90	3	328	43	8	11	36	1.72
1080213--1080262	25	2.0	25	100	0	100	32	4	12	52	1.57
1081279--1081321	3	14.3	3	100	0	86	34	0	0	65	0.93
1084001--1084034	16	2.1	16	88	0	50	55	2	0	41	1.15
1084019--1084087	23	3.0	23	72	16	63	63	2	1	31	1.18
1084019--1084063	24	1.9	23	81	4	54	64	2	2	31	1.18
1084059--1084103	23	1.9	24	90	4	74	64	2	0	33	1.06
1085609--1085663	20	2.8	20	100	0	110	29	27	14	29	1.95
1091050--1091074	13	1.9	13	100	0	50	28	16	16	40	1.89
1097611--1097643	3	10.7	3	93	6	57	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099417--1099445	2	14.5	2	100	0	58	48	0	0	51	1.00
1102222--1102267	21	2.2	21	100	0	92	39	13	28	19	1.89
1102349--1102499	72	2.1	72	93	0	257	37	13	26	23	1.91
1107257--1107606	42	8.3	42	93	2	551	23	22	21	33	1.98
1107613--1107732	37	3.2	37	90	1	186	35	21	23	20	1.96
1107759--1107869	37	3.0	37	90	0	177	42	19	16	21	1.89
1107565--1107864	153	2.0	153	88	0	447	34	21	21	22	1.97
1107871--1108436	109	5.2	109	91	1	848	30	22	16	30	1.96
1108592--1108624	3	10.7	3	93	6	57	36	0	0	63	0.95
1110147--1110171	2	12.5	2	100	0	50	48	0	0	52	1.00
1111735--1111773	21	1.9	21	89	5	62	33	12	7	46	1.71
1112150--1112174	8	3.1	8	100	0	50	40	0	0	60	0.97
1112359--1112412	15	3.3	15	72	22	54	57	3	1	37	1.27
1112361--1112415	16	3.2	16	74	20	58	58	3	1	36	1.26
1112361--1112439	20	4.2	20	75	20	89	59	2	1	36	1.19
1112359--1112429	35	2.0	35	89	8	108	57	2	1	38	1.22
1112470--1112531	22	2.8	22	73	20	58	45	1	0	53	1.10
1114510--1114564	27	2.0	27	100	0	110	36	3	21	38	1.71
1124904--1124983	20	3.8	21	76	12	74	25	33	25	16	1.95
1124915--1124989	21	3.5	21	77	12	73	22	36	25	16	1.94
1142188--1142274	36	2.4	36	74	1	84	54	26	3	16	1.58
1145313--1145354	20	2.2	20	86	4	59	73	4	11	9	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1145375--1145412	20	1.9	20	94	0	67	65	5	26	2	1.27
1146579--1146627	19	2.7	17	84	9	53	26	20	28	24	1.99
1163063--1163109	25	2.0	23	83	8	58	31	4	10	53	1.55
1173248--1173279	3	10.7	3	100	0	64	68	0	0	31	0.90
1174521--1174573	20	2.7	21	88	8	76	30	1	0	67	1.01
1179432--1180661	105	11.7	105	95	0	2120	33	25	18	22	1.96
1180671--1180915	124	2.0	124	87	0	355	32	26	17	23	1.97
1181006--1181111	36	2.9	36	91	0	176	22	21	15	40	1.90
1181537--1181589	20	2.7	21	88	8	76	30	1	0	67	1.01
1184131--1184155	13	1.9	13	100	0	50	64	0	28	8	1.22
1184768--1184814	20	2.3	20	96	0	85	31	27	19	21	1.97
1184805--1184851	20	2.5	19	86	6	69	46	23	10	19	1.80
1185002--1185056	22	2.5	22	96	0	101	21	43	16	18	1.88
1185185--1185320	65	2.1	65	98	0	263	36	10	13	38	1.79
1185487--1185559	19	3.8	20	89	5	105	12	16	21	49	1.78
1187684--1187802	42	2.8	42	83	2	123	22	36	17	22	1.94
1187690--1187802	21	5.4	21	77	4	102	22	37	18	22	1.94
1189152--1189300	64	2.3	64	91	0	244	30	2	15	52	1.54
1189368--1189476	20	5.8	20	69	13	70	37	20	17	24	1.93
1189536--1189573	20	1.9	20	100	0	76	21	21	21	36	1.95
1189743--1189778	18	2.0	18	94	0	63	16	2	25	55	1.55
1189986--1190021	16	2.4	15	86	13	56	69	0	2	27	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190942--1190978	18	2.1	18	89	0	56	51	10	5	32	1.60
1191364--1191413	25	2.0	25	96	0	91	44	22	8	26	1.80
1191802--1191837	18	2.0	18	88	0	54	19	2	19	58	1.52
1194091--1194144	24	2.2	24	93	0	90	40	20	18	20	1.91
1194574--1194620	19	2.5	19	96	0	85	34	23	12	29	1.92
1194910--1194947	16	2.5	15	84	12	51	65	0	5	28	1.14
1195123--1195336	60	3.5	60	79	5	243	29	12	25	32	1.93
1195124--1195404	20	14.0	20	83	5	196	27	13	25	33	1.93
1201956--1202798	282	3.0	281	91	1	1341	30	16	19	33	1.94
1202836--1202920	43	2.0	43	85	0	116	23	24	21	30	1.99
1204889--1204977	32	2.9	31	86	9	121	33	17	19	29	1.95
1208569--1208624	21	2.7	21	100	0	112	23	23	21	32	1.98
1212194--1212311	30	3.8	31	83	5	123	34	21	16	27	1.94
1212225--1212313	31	2.8	32	81	5	101	33	20	16	29	1.95
1214889--1214931	17	2.5	17	81	7	52	20	4	9	65	1.40
1215147--1215171	13	1.9	13	100	0	50	24	0	0	76	0.80
1216501--1216574	35	2.1	35	85	5	96	33	0	21	44	1.53
1221923--1221963	16	2.6	16	88	3	57	36	12	21	29	1.90
1223957--1224020	24	2.7	24	81	9	69	60	0	1	37	1.06
1223976--1224025	23	2.2	22	86	10	66	56	0	0	44	0.99
1223977--1224019	12	3.6	12	78	9	52	62	0	0	37	0.95
1227204--1227252	3	16.7	3	87	4	73	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1230643--1231226	55	10.7	55	89	2	865	28	28	14	27	1.96
1230643--1231226	108	5.3	109	91	2	861	28	28	14	27	1.96
1230643--1231226	163	3.6	164	89	2	872	28	28	14	27	1.96
1231699--1231732	13	2.6	13	100	0	68	50	0	38	11	1.39
1232256--1232309	11	4.7	12	72	25	53	14	9	0	75	1.03
1232243--1232303	25	2.5	24	85	15	88	13	6	1	78	1.01
1232239--1232309	33	2.1	34	87	7	101	12	7	1	78	1.00
1232253--1232325	34	2.2	33	82	2	83	10	15	0	73	1.08
1244204--1244237	14	2.3	15	90	10	52	41	2	2	52	1.31
1246501--1246576	40	1.9	39	86	7	109	27	10	22	39	1.87
1250712--1250789	20	3.9	20	91	0	120	21	23	7	47	1.76
1251438--1251482	21	2.1	22	80	12	58	33	11	24	31	1.90
1252313--1252346	16	2.1	16	88	0	50	61	0	38	0	0.96
1253571--1253658	10	9.1	10	74	12	85	19	23	29	27	1.98
1253571--1253660	19	4.7	19	87	6	119	18	25	28	26	1.98
1253654--1253728	17	4.4	17	98	0	141	17	44	24	14	1.86
1253718--1253756	7	5.9	7	82	11	55	17	28	30	23	1.97
1253718--1253756	13	3.0	13	96	0	69	17	28	30	23	1.97
1260936--1261023	10	9.1	10	72	12	76	19	22	29	28	1.98
1260936--1261025	19	4.7	19	84	6	110	18	24	28	27	1.98
1261019--1261051	17	1.9	17	100	0	66	18	42	24	15	1.88
1261020--1261059	17	2.4	17	91	0	62	20	42	20	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1261049--1261087	13	3.0	13	96	0	69	17	30	28	23	1.97
1261049--1261091	7	6.4	7	86	10	63	18	30	27	23	1.98
1263117--1263151	2	17.5	2	100	0	70	51	0	0	48	1.00
1263163--1263209	3	15.7	3	80	8	51	38	2	0	59	1.09
1263163--1263209	17	2.9	16	81	9	60	38	2	0	59	1.09
1263169--1263209	9	4.7	9	84	6	57	39	2	0	58	1.11
1264563--1264593	8	3.8	8	91	8	53	35	3	0	61	1.12
1267617--1267685	23	3.0	22	77	8	75	31	24	26	17	1.97
1267778--1267824	20	2.3	20	88	0	76	38	21	12	27	1.90
1268167--1268194	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9