genome.fa.s8798.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008798.1 Hibiscus syriacus cultivar Beakdansim tig00111947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1825372

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1068 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640705--1640816	42	2.7	42	80	5	120	22	17	38	21	1.93
1641302--1641347	20	2.4	19	89	7	67	39	28	17	15	1.90
1641391--1641458	20	3.4	20	81	4	84	17	22	26	33	1.96
1641606--1641655	18	2.8	18	96	0	91	42	8	18	32	1.79
1643367--1643434	20	3.5	20	77	2	75	50	20	14	14	1.78
1644021--1644112	20	4.6	20	81	5	105	27	20	21	30	1.98
1644104--1644155	21	2.4	22	74	6	61	36	19	25	19	1.95
1644826--1644906	34	2.4	34	97	0	153	23	14	11	50	1.75
1644826--1644921	34	2.8	34	90	3	120	25	13	16	44	1.84
1655937--1655982	21	2.2	20	88	3	65	17	13	13	56	1.67
1655940--1656008	27	2.5	28	79	11	72	21	14	11	52	1.73
1657264--1657318	25	2.2	25	83	9	76	76	14	7	1	1.08
1658961--1659030	36	1.9	36	88	2	104	30	17	11	41	1.84
1658996--1659196	106	1.9	105	90	3	323	32	16	10	40	1.82
1659551--1659618	30	2.3	31	89	5	104	33	7	14	44	1.73
1659654--1659744	30	3.1	29	84	4	110	30	13	14	41	1.84
1659664--1659774	30	3.7	29	81	10	116	28	16	14	40	1.87
1659811--1659882	37	1.9	38	83	8	94	40	11	11	37	1.76
1659951--1660044	28	3.4	28	92	2	154	25	11	14	47	1.78
1659951--1660060	28	3.9	27	89	4	139	24	14	15	45	1.84
1659951--1660060	56	2.0	56	87	3	159	24	14	15	45	1.84
1660079--1660188	40	2.7	40	75	9	105	20	35	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1660089--1660331	134	1.8	134	88	0	378	23	32	17	25	1.97
1660073--1660369	134	2.2	134	80	5	366	24	31	18	24	1.97
1660263--1660440	94	1.9	94	84	2	241	27	30	17	23	1.97
1660714--1660767	3	18.3	3	88	3	83	29	1	1	66	1.12
1666045--1666251	83	2.5	83	81	3	238	39	12	22	25	1.89
1669921--1669966	24	1.9	24	90	0	74	54	15	2	28	1.53
1673674--1673820	60	2.4	62	86	6	212	31	17	13	37	1.88
1675089--1675133	21	2.1	21	84	12	56	46	0	11	42	1.39
1684160--1684224	29	2.3	29	78	7	71	55	0	3	41	1.15
1684177--1684229	23	2.3	23	78	21	58	49	0	3	47	1.19
1685516--1685612	2	48.5	2	100	0	194	50	49	0	0	1.00
1685830--1685947	24	5.0	23	85	9	139	41	19	12	26	1.87
1685833--1685947	48	2.4	48	85	5	153	40	20	13	26	1.88
1685833--1685969	48	2.9	47	81	4	148	42	18	12	26	1.86
1688460--1688499	18	2.2	18	90	0	62	15	17	50	17	1.79
1695329--1695389	3	19.7	3	83	6	77	59	0	0	40	0.98
1695327--1695389	22	2.9	22	90	6	101	57	0	0	42	0.99
1695329--1695389	25	2.4	25	97	0	113	59	0	0	40	0.98
1695358--1695400	19	2.3	19	87	0	59	60	2	0	37	1.10
1695329--1695400	22	3.3	21	82	7	90	59	1	0	38	1.06
1696730--1696780	25	2.0	25	85	7	68	49	0	1	49	1.12
1696825--1696908	32	2.6	32	83	7	89	48	5	2	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698138--1698170	17	2.0	17	88	5	50	33	42	3	21	1.68
1704693--1704769	38	2.1	38	83	11	97	45	1	1	51	1.17
1704717--1704856	73	1.9	71	86	2	199	43	5	9	41	1.60
1707264--1707334	35	2.0	35	86	5	99	47	7	15	29	1.71
1707577--1707649	30	2.4	30	88	0	101	39	12	30	17	1.87
1708991--1709095	37	2.8	37	86	0	147	43	14	12	29	1.82
1715260--1715792	183	2.9	183	95	2	950	27	21	21	30	1.98
1716948--1717061	36	3.2	35	73	2	93	25	15	14	44	1.84
1716932--1717106	72	2.4	75	84	8	218	26	17	13	42	1.86
1716948--1717143	72	2.7	72	82	8	177	26	16	15	41	1.88
1717122--1717274	39	3.6	39	68	21	110	27	22	14	35	1.93
1717177--1717496	106	3.1	105	91	3	506	30	20	12	36	1.90
1717396--1717471	36	2.1	36	90	0	116	22	21	15	40	1.90
1717671--1718196	105	5.0	105	89	2	774	33	26	18	21	1.96
1718964--1719126	65	2.5	64	83	3	211	26	15	26	30	1.96
1719343--1719382	20	2.0	21	85	14	57	47	7	2	42	1.45
1720987--1721050	21	3.0	21	77	4	67	29	6	42	21	1.78
1721736--1721792	20	2.7	21	86	5	80	28	19	21	31	1.97
1722875--1722905	8	3.8	8	95	4	53	35	0	0	64	0.94
1723519--1723550	12	2.5	13	95	5	57	81	0	18	0	0.70
1726298--1726335	16	2.3	16	95	4	67	26	7	28	36	1.84
1736248--1736281	8	4.4	8	96	3	61	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1736249--1736293	11	4.0	11	80	5	54	82	0	2	15	0.77
1737298--1737663	55	6.7	55	93	2	614	26	15	29	28	1.96
1737298--1737663	108	3.4	108	95	0	642	26	15	29	28	1.96
1737305--1737663	163	2.2	163	92	3	623	27	15	29	28	1.96
1737632--1737874	54	4.5	54	88	2	328	31	21	23	23	1.98
1740537--1740568	7	4.4	7	96	4	55	12	0	3	84	0.74
1740766--1740813	20	2.5	19	80	10	53	39	0	2	58	1.10
1740890--1740934	20	2.2	20	84	0	54	44	4	2	48	1.35
1741344--1741591	121	2.0	123	96	2	466	47	5	12	34	1.64
1743349--1743374	2	13.0	2	100	0	52	50	0	0	50	1.00
1746495--1746561	21	3.2	21	66	19	59	20	20	29	28	1.98
1746512--1746602	20	4.4	21	73	14	91	23	20	21	34	1.97
1746495--1746581	41	2.1	41	93	4	149	21	20	26	31	1.98
1747513--1747580	20	3.3	20	67	18	59	30	23	23	22	1.99
1747491--1747590	41	2.4	41	91	0	164	29	26	23	22	1.99
1748086--1748132	23	2.0	23	95	0	85	27	25	4	42	1.73
1756202--1756242	18	2.2	20	86	8	59	26	7	14	51	1.69
1759192--1759225	16	2.0	18	88	11	54	41	5	0	52	1.25
1760208--1760286	40	2.0	40	92	0	131	40	16	15	27	1.88
1766131--1766166	18	2.0	18	88	0	54	50	0	2	47	1.15
1767976--1768092	57	2.0	58	86	1	164	23	28	9	39	1.85
1768213--1768244	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1770828--1770881	21	2.6	21	90	0	81	37	24	12	25	1.91
1770870--1771046	79	2.2	78	84	3	228	33	21	12	31	1.91
1771406--1771450	20	2.2	20	92	0	72	35	15	26	22	1.94
1771439--1771611	79	2.2	79	87	0	247	30	13	21	35	1.91
1771578--1771652	21	3.6	21	83	1	98	25	14	28	32	1.95
1772189--1772229	13	3.5	13	75	25	54	70	7	0	21	1.11
1778038--1778089	23	2.3	23	86	0	68	19	17	21	42	1.89
1783126--1783182	23	2.5	23	79	0	78	43	12	14	29	1.81
1783317--1783348	3	10.7	3	100	0	64	65	0	0	34	0.93
1783413--1783490	29	2.7	29	89	0	120	39	3	3	52	1.38
1790691--1790722	2	16.0	2	100	0	64	50	0	50	0	1.00
1792730--1792758	15	1.9	15	100	0	58	44	0	13	41	1.44
1795569--1795682	60	1.9	60	83	3	149	33	24	4	37	1.75
1795814--1795958	57	2.5	59	79	12	156	42	6	20	31	1.78
1796016--1796074	27	2.2	27	84	0	73	47	8	8	35	1.64
1800770--1803821	899	3.4	899	94	1	5276	33	15	23	27	1.95
1807754--1807798	21	2.1	21	95	0	81	24	17	11	46	1.81
1811606--1811646	16	2.5	16	88	4	55	51	2	2	43	1.28
1813078--1813113	17	2.1	17	89	5	54	55	0	5	38	1.23
1820659--1820701	15	2.8	15	83	16	61	79	6	0	13	0.93

Tables:   1   2   3   4   5   6   7   8   9

The End!