genome.fa.s8814.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008814.1 Hibiscus syriacus cultivar Beakdansim tig00111976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1021170

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 504 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6567--6600	16	2.1	17	89	10	54	11	23	0	64	1.26
8999--9037	19	2.0	20	90	10	62	41	5	12	41	1.65
9316--9357	16	2.6	16	96	0	75	28	11	33	26	1.92
10557--10596	19	2.0	20	90	4	64	65	0	15	20	1.28
11007--11058	19	2.6	21	84	6	72	48	5	13	32	1.66
14427--14496	19	3.8	18	80	16	81	7	14	4	74	1.19
14764--14803	19	2.0	20	90	4	64	65	0	15	20	1.28
16756--16782	13	2.1	13	100	0	54	7	29	7	55	1.55
20008--20070	18	3.9	16	79	20	69	74	4	17	3	1.12
20782--20834	24	2.2	24	86	6	72	37	13	24	24	1.91
21597--21655	29	2.0	30	86	3	84	28	8	10	52	1.64
22529--22580	21	2.6	21	90	6	81	34	13	5	46	1.67
24302--24349	15	3.1	14	83	16	60	58	0	25	16	1.38
24298--24351	26	2.1	24	83	16	65	59	0	22	18	1.38
29520--29562	23	1.9	21	81	13	50	32	18	11	37	1.87
35181--35223	23	1.9	21	81	13	50	34	13	18	32	1.90
36374--36402	15	2.0	15	93	6	51	0	20	3	75	0.94
41269--41307	14	2.9	14	96	3	71	23	43	0	33	1.54
41484--41516	11	3.0	11	100	0	66	9	36	0	54	1.32
41485--41516	6	5.7	6	85	14	50	9	34	0	56	1.32
41778--41806	11	2.7	11	94	5	51	82	0	17	0	0.66
41954--41990	14	2.4	16	86	8	51	13	13	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45743--45792	14	3.6	14	91	0	55	22	38	4	36	1.73
45750--45801	14	3.8	14	89	2	70	23	40	1	34	1.66
46618--47029	221	1.9	221	87	2	603	25	14	19	39	1.90
48647--48682	13	2.6	14	95	4	65	25	44	0	30	1.54
49311--49345	16	2.1	17	89	5	54	17	14	0	68	1.21
55618--55660	15	2.8	16	80	16	54	32	6	4	55	1.47
56819--56886	26	2.6	26	90	0	100	29	17	33	19	1.95
58670--58710	22	1.9	21	85	5	55	36	34	2	26	1.70
61833--61866	12	2.9	12	91	4	52	38	0	35	26	1.57
62035--62085	19	2.5	20	84	6	68	43	5	13	37	1.69
62050--62091	19	2.2	19	83	8	50	35	9	11	42	1.74
64383--64409	13	2.1	13	100	0	54	62	14	7	14	1.51
64744--64789	21	2.2	21	96	0	83	30	4	36	28	1.76
69897--69968	15	4.9	15	71	19	62	62	0	23	13	1.31
82663--82776	35	3.2	35	86	1	165	31	2	37	28	1.71
86805--87988	592	2.0	592	99	0	2359	32	13	17	36	1.89
96148--96217	35	2.0	35	91	0	113	32	2	35	28	1.72
96195--96220	13	2.0	13	100	0	52	38	0	38	23	1.55
98631--98683	9	5.7	9	80	6	61	1	5	11	81	0.94
98624--98683	28	2.1	28	87	6	86	1	6	13	78	1.02
108923--108957	13	2.8	13	91	8	56	40	0	31	28	1.57
113780--113856	14	5.5	14	70	20	54	15	22	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115242--115304	12	5.1	12	75	7	63	77	7	12	1	1.05
115228--115295	30	2.3	30	81	0	82	75	5	16	2	1.13
117180--117458	54	5.2	53	71	15	171	33	8	17	40	1.80
117980--118022	8	5.6	8	84	15	56	74	0	13	11	1.07
118775--118811	16	2.3	16	100	0	74	18	21	5	54	1.64
124741--124782	17	2.5	17	77	11	50	28	11	0	59	1.33
138476--138518	22	2.0	22	95	0	77	30	11	13	44	1.80
142399--142443	11	4.1	11	82	5	56	71	4	11	13	1.29
142399--142440	22	1.9	22	90	9	68	69	4	11	14	1.34
146752--146801	8	6.6	8	74	21	54	0	4	10	86	0.71
146745--146801	29	2.0	29	92	0	96	0	5	12	82	0.82
147120--147164	11	4.1	11	82	5	56	71	4	11	13	1.29
147120--147161	22	1.9	22	90	9	68	69	4	11	14	1.34
148936--148996	32	1.9	31	86	3	86	16	16	9	57	1.64
149503--149570	27	2.5	27	86	9	86	22	17	11	48	1.79
150874--150993	31	3.9	31	73	17	90	76	5	17	0	1.01
150902--150995	6	16.2	6	70	16	56	77	4	17	1	0.98
150880--150993	41	2.8	38	79	11	113	76	5	17	0	1.02
150877--150958	15	5.3	15	72	25	64	76	4	18	0	0.95
150924--150993	13	5.5	13	71	20	58	77	5	15	1	1.03
150877--150993	34	3.5	33	76	20	95	76	5	17	0	1.01
152393--152758	130	2.8	130	83	4	450	24	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152653--152873	121	1.8	121	82	7	288	23	32	18	25	1.97
152787--152900	40	2.8	40	72	9	104	21	33	18	26	1.96
159737--159819	29	2.9	29	94	0	130	15	42	26	15	1.87
159998--160049	27	1.9	27	100	0	104	19	15	23	42	1.89
162407--162467	26	2.4	24	76	15	59	42	1	6	49	1.38
162836--162862	14	1.9	14	100	0	54	74	14	3	7	1.18
162833--162865	17	1.9	17	88	11	50	72	15	3	9	1.21
163179--163281	49	2.2	48	81	10	135	45	9	0	44	1.36
163181--163275	47	2.0	49	85	4	131	45	7	0	47	1.31
163262--163302	21	2.0	21	90	0	64	51	17	2	29	1.58
163567--163616	21	2.3	23	82	6	59	46	6	14	34	1.69
163814--163889	28	2.7	29	91	2	127	19	35	26	18	1.95
165831--165863	13	2.5	13	95	0	57	75	0	15	9	1.03
169644--169701	23	2.5	23	82	0	71	39	10	22	27	1.86
169821--169853	12	2.6	13	90	4	50	48	0	0	51	1.00
169894--169975	43	1.9	43	85	5	112	36	7	2	53	1.42
169965--169989	13	1.9	13	100	0	50	24	4	0	72	1.02
173745--173848	21	5.4	19	71	21	74	58	0	2	37	1.19
173767--173848	21	3.9	21	77	19	82	58	1	2	37	1.19
173767--173848	40	2.0	40	86	4	112	58	1	2	37	1.19
175400--175449	23	2.1	24	85	3	66	38	0	2	60	1.09
175457--175523	23	2.9	23	84	4	73	37	4	5	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175700--175755	24	2.4	23	85	8	69	33	3	1	60	1.24
176411--176467	2	29.5	2	86	13	84	49	1	0	49	1.11
176411--176475	16	4.3	15	88	9	96	47	3	0	49	1.17
176731--176778	20	2.3	20	85	3	69	22	14	16	45	1.84
182768--182827	23	2.8	20	83	16	84	25	18	23	33	1.97
182781--182836	23	2.4	23	96	0	103	28	17	19	33	1.95
183778--184144	175	2.1	176	92	2	612	41	3	9	44	1.55
191294--191341	20	2.3	21	85	7	62	27	2	8	62	1.35
197135--197173	2	19.5	2	94	0	69	48	51	0	0	1.00
200984--201132	21	7.2	21	95	1	257	20	22	23	33	1.97
201812--202187	21	17.9	21	93	0	626	33	21	23	21	1.98
202173--202221	21	2.4	21	87	12	68	42	24	18	14	1.87
205546--205711	87	1.9	87	86	4	237	31	25	13	28	1.93
205773--206119	171	2.0	171	89	0	532	26	21	15	36	1.94
209098--209135	20	1.9	20	84	10	51	42	10	0	47	1.38
209220--209335	36	3.3	35	68	17	103	48	6	6	38	1.55
209360--209396	17	2.1	18	90	5	58	62	0	0	37	0.96
210443--210472	2	15.0	2	100	0	60	50	0	0	50	1.00
213845--213872	14	2.0	14	100	0	56	28	28	0	42	1.56
219049--219101	20	2.5	21	79	14	56	60	0	22	16	1.36
222476--222504	3	9.7	3	100	0	58	0	31	0	68	0.89
226658--226693	19	1.9	18	88	5	54	41	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226639--226666	2	14.0	2	100	0	56	50	0	0	50	1.00
228818--228876	6	9.8	6	100	0	118	49	16	0	33	1.47
234692--234803	57	2.0	57	96	0	206	21	22	24	32	1.98
238338--238410	30	2.4	30	93	0	128	19	15	16	49	1.80
241219--241245	13	2.1	13	100	0	54	37	14	25	22	1.93
241820--241879	31	1.9	31	82	0	75	40	10	13	36	1.78
254640--254681	19	2.2	20	86	4	59	57	7	2	33	1.39
256325--256378	13	4.2	13	78	4	65	27	20	16	35	1.94
256325--256375	25	2.0	25	84	0	66	27	21	17	33	1.96
262892--263203	6	52.3	6	94	2	522	51	0	48	0	1.03

Tables:   1   2   3   4   5