Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008814.1 Hibiscus syriacus cultivar Beakdansim tig00111976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1021170

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 504 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
964547--964659
59
1.9
59
87
0
163
28
15
29
26
1.96
964700--965018
59
5.4
59
85
0
379
31
14
24
28
1.95
965028--965998
38
26.1
36
71
11
441
37
14
16
32
1.88
965028--965478
74
6.0
74
78
7
371
37
15
15
31
1.90
965041--965954
112
8.2
112
78
5
825
36
14
16
32
1.89
965155--965991
74
11.3
74
82
4
925
37
14
16
32
1.88
971166--971245
26
3.1
26
90
0
133
7
28
5
58
1.46
978650--978687
2
19.5
2
94
5
69
47
0
0
52
1.00
978650--978689
21
1.9
21
100
0
80
47
0
0
52
1.00
979360--979513
45
3.4
45
91
3
249
25
22
12
38
1.90
979910--979955
22
2.2
21
88
7
67
26
28
17
28
1.98
980004--980070
20
3.4
20
85
10
93
20
35
13
29
1.91
981453--981788
181
1.9
181
94
0
600
33
19
14
33
1.91
984596--984642
19
2.4
18
80
20
51
74
4
10
10
1.20
994336--994505
60
2.8
60
82
7
202
40
5
21
31
1.77
994385--994483
29
3.3
29
68
10
83
39
4
23
33
1.73
994809--994833
13
1.9
13
100
0
50
52
0
0
48
1.00
995031--995065
2
17.5
2
100
0
70
48
0
0
51
1.00
999820--999875
2
28.0
2
100
0
112
50
0
0
50
1.00
1001951--1001979
2
14.5
2
100
0
58
48
0
0
51
1.00
1005396--1005426
15
2.1
15
100
0
62
45
6
19
29
1.75
1008305--1008366
22
2.8
22
90
0
97
27
24
19
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1012724--1012754
16
1.9
16
93
0
53
48
12
0
38
1.42
1015386--1015502
55
2.1
54
95
3
207
39
5
22
32
1.78

Tables:   1   2   3   4   5

The End!