genome.fa.s8814.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008814.1 Hibiscus syriacus cultivar Beakdansim tig00111976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1021170

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 504 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271941--272208	131	2.0	131	83	2	333	41	15	10	32	1.82
272681--272708	5	5.6	5	100	0	56	82	0	0	17	0.68
274209--274238	3	9.7	3	92	7	51	66	0	0	33	0.92
274435--274926	133	3.6	134	79	4	490	33	16	19	29	1.94
276242--276271	13	2.3	13	100	0	60	13	6	0	80	0.91
282792--282837	20	2.3	19	85	14	58	50	8	15	26	1.73
287032--287449	203	2.0	203	85	6	560	33	18	18	30	1.95
287821--288165	132	2.6	130	84	3	467	40	17	11	30	1.85
289974--290027	22	2.5	23	88	8	78	48	0	5	46	1.25
293891--293967	31	2.5	31	91	2	118	38	9	24	27	1.85
295316--295353	15	2.5	15	88	12	60	73	7	10	7	1.24
301446--301478	11	2.9	12	91	8	52	36	0	27	36	1.57
300697--301761	537	2.0	523	92	2	1752	35	7	20	36	1.82
302168--302329	40	4.1	40	93	0	270	24	15	26	33	1.95
302433--302520	44	2.0	45	88	2	133	39	6	22	30	1.80
310937--310973	18	1.9	19	89	10	58	45	16	10	27	1.80
313293--313369	31	2.5	31	78	2	82	27	28	28	15	1.96
315860--315905	19	2.4	19	82	13	58	30	23	26	19	1.98
323050--323095	21	2.2	21	88	7	67	60	0	23	15	1.34
327146--327196	22	2.3	22	86	10	68	64	0	17	17	1.29
327146--327190	22	2.1	22	91	4	74	64	0	17	17	1.29
330597--330635	18	2.1	19	85	4	53	66	5	7	20	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333253--333285	13	2.7	12	90	9	57	78	0	3	18	0.87
333253--333285	6	5.3	6	92	7	57	78	0	3	18	0.87
336134--336168	18	1.9	18	88	0	52	65	5	5	22	1.36
340897--340947	11	4.9	11	75	22	56	13	13	33	39	1.84
340882--340948	30	2.2	30	100	0	134	13	17	31	37	1.89
348880--348945	31	2.1	31	82	0	78	31	10	30	27	1.90
355023--355061	20	2.0	20	94	0	69	25	20	30	23	1.98
358232--358277	19	2.4	19	88	0	65	65	4	2	28	1.23
367486--367551	31	2.1	31	82	0	78	31	10	30	27	1.90
373574--373612	20	2.0	20	94	0	69	25	20	30	23	1.98
376782--376827	19	2.4	19	88	0	65	65	4	2	28	1.23
377959--377983	2	12.5	2	100	0	50	48	0	0	52	1.00
384299--384326	12	2.3	12	100	0	56	53	14	0	32	1.41
386022--386087	31	2.1	31	85	0	87	31	9	30	28	1.88
391441--391487	21	2.4	19	79	13	51	46	0	10	42	1.38
392088--392126	20	2.0	20	94	0	69	25	20	30	23	1.98
399702--399729	12	2.3	12	100	0	56	53	14	0	32	1.41
401431--401496	31	2.1	31	82	0	78	31	10	30	27	1.90
415261--415306	19	2.4	19	88	0	65	65	4	2	28	1.23
423894--423932	20	2.0	20	90	5	62	74	5	2	17	1.12
426636--426696	27	2.2	28	91	5	99	34	16	13	36	1.87
431075--431124	24	2.0	24	85	11	66	60	10	6	24	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435798--436106	54	5.8	53	84	6	372	31	16	20	32	1.94
436008--436097	27	3.2	31	66	28	90	28	14	22	34	1.93
438185--438328	55	2.6	55	84	2	200	36	12	16	34	1.87
438548--438852	68	4.5	68	90	2	488	30	16	24	29	1.96
438852--439197	81	4.3	82	83	7	420	36	10	23	29	1.88
439258--439368	55	2.0	55	92	0	186	43	4	13	38	1.64
443134--443159	3	8.7	3	100	0	52	34	0	0	65	0.93
446027--446071	15	3.0	15	96	0	81	37	20	22	20	1.94
448683--448716	13	2.6	13	100	0	68	79	8	11	0	0.94
456755--456796	11	3.6	12	84	12	52	80	0	2	16	0.81
458011--458057	23	2.0	23	92	8	78	70	0	6	23	1.10
458011--458062	24	2.1	25	86	10	72	69	0	7	23	1.14
458043--458099	7	8.1	7	80	5	62	57	3	1	36	1.26
458043--458100	22	2.7	21	84	7	71	56	3	1	37	1.26
458097--458348	37	6.7	37	89	5	357	44	7	1	46	1.40
458106--458348	76	3.2	76	92	4	397	45	7	1	45	1.41
467791--467842	20	2.7	19	81	18	63	82	1	9	5	0.90
467791--467842	12	4.3	12	78	7	52	82	1	9	5	0.90
467846--467897	7	7.4	7	78	6	52	57	3	1	36	1.28
467860--467897	15	2.7	15	84	8	53	55	5	0	39	1.23
467884--467934	25	2.0	25	81	7	59	49	1	0	49	1.12
467884--467937	24	2.2	25	83	3	65	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467901--468153	37	6.7	38	83	6	304	44	5	1	48	1.34
468219--468260	16	2.6	16	88	0	57	57	23	0	19	1.41
472672--472708	2	18.5	2	100	0	74	51	0	0	48	1.00
473081--473182	33	3.1	33	85	5	152	30	11	18	39	1.87
473230--473302	10	7.7	9	80	17	53	69	0	0	30	0.88
473232--473302	3	24.3	3	78	21	80	69	0	0	30	0.89
482404--482461	26	2.2	26	100	0	116	24	13	20	41	1.89
484816--484946	57	2.3	56	79	6	158	51	7	1	39	1.40
484829--484946	29	4.2	28	70	8	96	52	7	1	38	1.40
484903--484961	29	2.0	29	83	6	75	59	6	3	30	1.40
490722--490784	23	2.5	24	82	12	65	38	9	6	46	1.62
490962--490987	13	2.0	13	100	0	52	23	0	0	76	0.78
492105--492173	21	3.5	20	72	20	65	46	15	7	30	1.73
492108--492190	37	2.2	37	97	0	157	45	14	7	32	1.72
494495--494609	40	2.9	39	87	3	160	45	13	6	35	1.68
494479--494609	38	3.5	37	83	9	158	41	12	6	38	1.68
494700--494761	32	1.9	32	86	0	88	54	8	6	30	1.55
494809--494943	39	3.4	38	80	9	155	42	12	8	37	1.73
494959--495264	58	5.3	58	78	9	279	42	10	8	38	1.70
494991--495264	58	4.8	59	84	4	312	42	10	9	37	1.71
495470--495624	45	3.5	44	80	1	139	32	15	9	41	1.80
495510--495644	45	3.0	44	81	4	144	36	14	9	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500674--500723	17	2.9	17	84	0	64	36	14	8	42	1.74
502197--502246	17	2.9	17	84	0	64	42	8	14	36	1.74
504546--504581	2	18.0	2	88	0	54	44	0	5	50	1.25
506518--506571	24	2.2	24	87	6	74	62	7	0	29	1.22
506537--506578	18	2.3	18	80	12	50	64	2	0	33	1.07
506704--506963	91	2.9	91	89	3	391	23	21	15	38	1.92
506882--507240	136	2.6	136	92	0	592	25	22	17	35	1.95
508109--508193	15	5.5	15	78	12	84	7	15	1	76	1.06
508106--508157	27	1.9	27	88	7	79	7	15	0	76	0.99
508123--508191	9	8.4	9	73	19	62	7	14	1	76	1.06
514587--514640	24	2.2	24	90	6	83	61	7	0	31	1.24
514606--514647	18	2.3	18	84	12	59	61	2	0	35	1.09
514798--515019	82	2.7	82	78	1	212	29	13	18	37	1.90
516036--516072	18	2.1	17	95	5	65	8	5	16	70	1.30
517775--518200	193	2.2	187	85	3	548	42	12	15	30	1.83
518567--518921	197	1.8	197	85	2	507	35	6	22	35	1.80
519284--519319	17	2.1	17	94	0	63	44	13	33	8	1.74
520190--520240	24	2.2	23	83	13	61	49	5	3	41	1.45
520662--520806	62	2.3	65	90	4	224	28	2	45	23	1.64
525585--525610	12	2.2	12	100	0	52	46	7	0	46	1.31
528246--528385	57	2.5	57	91	3	228	32	13	22	30	1.93
530340--531044	225	3.1	223	88	2	986	32	16	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530672--531154	117	4.2	115	76	9	468	31	17	14	36	1.90
531545--531598	20	2.3	24	70	29	62	24	27	12	35	1.92
531550--531596	20	2.3	20	96	0	85	25	25	12	36	1.92
535907--535942	18	1.9	19	88	5	56	36	0	0	63	0.94
535912--535950	18	2.2	18	86	4	53	35	0	2	61	1.10
545563--545609	24	2.0	24	91	0	76	48	19	4	27	1.67
545575--545626	24	2.2	24	82	0	59	46	19	11	23	1.82
546201--546263	27	2.3	28	88	2	92	22	11	23	42	1.85
546220--546278	27	2.2	27	81	0	64	27	11	16	44	1.83
546799--546860	28	2.3	27	82	2	79	27	27	24	20	1.99

Tables:   1   2   3   4   5