genome.fa.s8814.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008814.1 Hibiscus syriacus cultivar Beakdansim tig00111976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1021170

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 504 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546825--546853	10	2.9	10	100	0	58	20	27	31	20	1.98
548912--548974	23	2.7	24	85	2	83	47	17	9	25	1.77
549696--549755	27	2.2	27	84	3	75	23	10	20	46	1.80
553204--553263	27	2.2	28	87	3	86	26	10	18	45	1.81
553225--553281	27	2.2	26	83	3	69	28	10	17	43	1.82
557537--557604	33	2.1	33	91	0	109	25	14	27	32	1.95
557683--557876	44	4.4	44	88	4	241	36	5	22	35	1.77
558279--558314	14	2.6	14	91	4	56	25	25	2	47	1.65
559952--560014	27	2.3	28	88	2	92	20	9	23	46	1.80
560600--560624	13	1.9	13	100	0	50	40	20	24	16	1.91
562834--562896	24	2.6	24	82	0	72	50	14	9	25	1.72
562819--562909	24	3.8	24	75	5	67	52	13	9	24	1.70
563633--563684	26	2.0	27	92	3	88	21	15	15	48	1.81
571666--571724	22	2.6	22	86	2	91	35	30	6	27	1.83
572017--572058	18	2.3	19	83	4	59	2	16	2	78	0.96
572037--572107	24	2.9	22	83	14	70	7	16	1	74	1.10
576866--576915	20	2.5	20	87	9	75	10	6	44	40	1.63
577024--577079	21	2.7	21	88	0	85	25	16	19	39	1.91
577129--577179	21	2.4	21	80	0	57	31	15	15	37	1.89
577171--577240	20	3.5	20	86	1	88	34	20	10	35	1.86
578650--578678	6	4.8	6	100	0	58	65	0	17	17	1.27
579421--579491	34	2.1	34	85	12	94	29	28	11	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579823--579873	21	2.5	20	84	9	66	27	15	19	37	1.92
581494--581533	21	2.0	20	90	5	62	37	0	2	60	1.11
581493--581533	20	2.0	22	90	9	68	36	0	2	60	1.10
585105--585136	2	16.0	2	100	0	64	50	0	0	50	1.00
585499--585757	139	1.9	140	84	4	353	46	8	6	38	1.60
602481--602521	21	2.0	21	90	0	64	26	14	14	43	1.84
612879--612903	13	1.9	13	100	0	50	68	16	0	16	1.22
614827--614892	27	2.4	27	94	0	114	42	34	7	15	1.75
618794--618890	29	3.4	29	76	11	101	24	22	12	40	1.89
619089--619122	13	2.7	13	90	4	52	67	2	5	23	1.26
620998--621077	35	2.2	37	88	4	119	31	36	3	28	1.75
621515--621561	14	3.1	15	75	12	51	72	6	19	2	1.17
628214--628325	35	3.2	35	86	6	138	32	4	33	29	1.78
628661--628703	20	2.2	20	87	4	61	51	6	9	32	1.61
629409--629447	20	1.9	21	84	5	53	48	7	17	25	1.74
632030--632062	17	2.0	17	88	5	50	6	15	3	75	1.11
633985--634020	15	2.4	15	90	0	54	19	25	0	55	1.43
634220--634262	6	7.2	6	79	10	52	81	2	16	0	0.79
641814--641894	35	2.3	36	85	6	103	32	4	33	29	1.79
641838--641914	36	2.2	35	95	2	136	27	5	37	29	1.78
642251--642294	21	2.2	21	88	8	65	50	4	9	36	1.55
643000--643038	20	1.9	21	84	5	53	48	7	17	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651098--651134	17	2.2	17	100	0	74	21	18	16	43	1.88
662097--662130	17	2.0	17	94	0	59	35	0	32	32	1.58
662642--662674	15	2.1	16	94	5	59	60	0	27	12	1.32
668902--668998	13	8.0	12	72	22	62	28	3	37	30	1.73
668887--668999	36	3.2	36	92	1	174	27	3	36	32	1.74
669339--669389	19	2.6	20	87	3	68	45	5	15	33	1.71
672472--672515	15	2.9	15	80	16	54	2	15	2	79	0.93
672974--673070	13	8.0	12	72	22	62	28	3	37	30	1.73
672959--673071	36	3.2	36	92	1	174	27	3	36	32	1.74
673410--673460	19	2.6	20	87	3	68	45	5	15	33	1.71
676541--676584	15	2.9	15	80	16	54	2	15	2	79	0.93
676991--677086	33	2.8	34	80	10	81	29	2	35	33	1.69
677028--677140	36	3.2	36	88	1	156	27	3	35	33	1.74
677045--677140	13	7.9	12	71	18	65	29	3	35	32	1.73
677480--677530	19	2.6	20	87	3	68	45	5	15	33	1.71
680612--680655	15	2.9	15	80	16	54	2	15	2	79	0.93
681058--681122	33	2.0	33	81	6	78	27	3	36	32	1.72
681110--681206	13	8.0	12	72	22	62	28	3	37	30	1.73
681095--681207	36	3.2	36	92	1	174	27	3	36	32	1.74
681547--681597	19	2.6	20	87	3	68	45	5	15	33	1.71
685247--685359	36	3.2	36	91	1	165	27	3	35	33	1.74
685699--685749	19	2.6	20	81	3	59	43	5	17	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695566--695664	36	2.8	36	92	1	155	30	36	4	29	1.76
695599--695665	13	5.6	11	74	22	64	32	34	2	29	1.73
696122--696168	14	3.1	15	75	12	51	72	6	19	2	1.17
699625--699737	36	3.2	36	89	1	165	32	35	3	28	1.74
699625--699772	71	2.1	71	80	11	160	32	35	2	29	1.72
701097--701151	24	2.3	25	81	6	60	32	16	21	29	1.95
713255--713293	20	1.9	21	84	5	53	15	23	38	23	1.92
715618--715652	17	2.1	17	94	0	61	34	22	2	40	1.69
723213--723384	90	1.9	90	90	2	274	20	26	23	29	1.99
728385--728440	24	2.3	23	82	11	69	8	12	12	66	1.46
737053--737099	24	2.0	24	83	8	60	10	12	6	70	1.33
745411--745448	13	3.0	13	84	3	51	15	2	36	44	1.61
750300--750384	11	7.2	11	74	22	75	32	36	2	28	1.70
750297--750401	36	2.9	36	94	1	176	31	36	3	28	1.75
753686--753747	13	4.9	13	72	18	51	32	37	1	29	1.67
753688--753767	35	2.2	37	88	4	119	32	37	2	27	1.70
756625--756672	19	2.9	16	75	19	53	45	6	14	33	1.70
758415--758485	20	3.4	21	80	3	65	38	12	25	23	1.90
758907--759062	55	2.9	54	91	1	249	30	17	18	33	1.94
759556--759605	2	25.0	2	100	0	100	50	0	0	50	1.00
764972--765351	54	7.0	54	86	2	503	30	16	16	36	1.92
764972--765351	109	3.5	108	87	3	505	30	16	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764980--765370	163	2.4	163	87	3	554	30	16	17	35	1.92
767138--767206	33	2.1	33	94	0	120	27	17	15	39	1.90
772157--772286	66	2.0	67	90	1	208	46	10	10	31	1.73
774244--774275	2	16.5	2	93	6	57	50	0	0	50	1.00
777127--777190	19	3.5	19	79	14	55	4	17	0	78	0.92
777150--777212	8	7.9	8	72	24	53	0	19	1	79	0.82
777148--777207	13	4.7	12	84	15	68	0	18	1	80	0.80
777148--777212	18	3.7	18	78	19	66	0	18	1	80	0.80
777148--777213	27	2.5	26	75	22	59	0	18	1	80	0.79
777149--777213	19	3.5	17	78	15	67	0	18	1	80	0.80
778772--778817	23	2.0	24	83	12	60	50	10	6	32	1.63
780264--780525	46	5.7	46	91	0	409	21	20	15	41	1.89
780303--780518	26	9.3	26	64	23	131	20	21	16	41	1.90
780264--780526	91	2.9	92	92	1	420	22	20	15	41	1.89
780264--780525	137	1.9	138	92	0	436	21	20	15	41	1.89
780883--780973	41	2.2	41	88	0	128	26	25	10	37	1.89
785614--785679	32	2.1	32	83	11	82	65	1	0	33	1.02
785597--785741	78	1.9	77	81	12	181	61	2	0	35	1.13
785615--785741	24	5.0	24	77	21	116	62	1	0	35	1.04
785615--785744	27	4.9	26	73	16	99	62	1	0	36	1.05
785614--785744	54	2.4	53	80	12	158	61	1	0	36	1.05
785648--785753	54	2.0	54	88	7	162	62	1	0	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
785733--785785	24	2.2	24	81	15	65	62	3	0	33	1.13
785759--785828	37	1.9	36	82	8	88	62	8	1	27	1.32
787045--787103	3	20.0	3	82	3	66	62	0	0	37	0.95
787321--787382	20	3.3	20	66	25	62	17	24	9	48	1.77
787338--787399	19	3.4	19	70	17	67	16	22	14	46	1.83
787319--787416	36	2.7	36	98	0	187	19	23	12	44	1.84
787332--787391	17	3.2	20	68	18	65	21	21	15	41	1.89
787599--788084	113	4.3	115	88	5	704	28	20	14	36	1.92
787992--788156	73	2.3	72	91	1	258	32	17	16	32	1.93
787881--788219	186	1.8	181	92	3	570	29	20	15	34	1.93

Tables:   1   2   3   4   5