genome.fa.s8909.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008909.1 Hibiscus syriacus cultivar Beakdansim tig00112206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2327114

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5388--5429	21	2.0	20	86	4	57	30	26	26	16	1.97
5410--5559	68	2.2	68	82	4	171	28	24	28	18	1.98
5860--5931	29	2.5	29	90	0	108	37	11	12	38	1.79
6223--6291	23	3.0	23	95	4	131	23	24	26	26	2.00
10573--10599	2	13.5	2	100	0	54	0	48	0	51	1.00
15575--15607	16	1.9	18	88	11	52	15	45	9	30	1.77
17193--17237	7	6.4	7	94	0	81	15	0	37	46	1.46
27218--27250	16	2.1	16	100	0	66	57	24	12	6	1.57
27316--27390	10	7.7	10	69	21	61	57	21	12	9	1.62
27320--27384	16	4.1	16	95	0	121	56	23	12	7	1.61
28131--28182	14	4.1	14	74	23	60	53	23	11	11	1.69
28110--28178	23	3.0	23	84	2	84	57	18	11	11	1.63
31933--31973	2	20.5	2	100	0	82	48	0	0	51	1.00
34546--34575	2	15.0	2	92	0	51	50	3	0	46	1.18
43508--43544	2	18.5	2	100	0	74	0	48	0	51	1.00
43544--43578	2	17.5	2	100	0	70	48	0	0	51	1.00
59252--59299	17	2.9	17	78	12	55	54	2	0	43	1.12
65461--65510	25	2.0	26	92	4	84	42	32	14	12	1.82
71791--71836	2	23.0	2	100	0	92	50	0	0	50	1.00
82715--82781	31	2.2	31	86	0	89	47	10	19	22	1.79
85327--85370	21	2.1	21	82	0	52	20	0	27	52	1.47
88110--88153	18	2.4	18	84	0	52	63	2	0	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90884--90935	27	1.9	27	88	0	77	30	9	13	46	1.75
92700--92731	15	2.1	15	100	0	64	50	25	6	18	1.70
109244--109346	31	3.3	31	73	10	84	35	3	10	49	1.56
109474--109518	22	2.1	21	87	4	63	51	0	0	48	1.00
115084--115142	30	2.0	30	100	0	118	27	6	11	54	1.62
115387--115419	16	2.1	16	94	0	57	78	6	9	6	1.08
115729--115768	18	2.2	19	90	4	64	62	2	2	32	1.22
115740--115779	18	2.2	18	86	0	53	67	0	0	32	0.91
123966--124001	18	1.9	19	94	5	65	30	0	22	47	1.52
137258--137310	2	26.5	2	100	0	106	49	0	0	50	1.00
140942--141188	122	2.0	122	98	0	476	34	24	19	21	1.97
142482--142545	32	2.0	33	87	3	94	62	6	17	14	1.51
152401--152436	10	3.3	11	92	7	56	0	16	55	27	1.42
152398--152432	5	6.6	5	96	3	52	0	20	54	25	1.45
153139--153176	15	2.4	16	91	8	60	34	5	0	60	1.19
158146--158184	20	2.0	20	89	0	60	28	10	2	58	1.44
162728--162765	20	1.9	20	84	10	51	28	5	13	52	1.61
162841--162945	51	2.1	50	83	5	131	38	8	13	40	1.75
163224--163280	31	1.9	30	89	7	89	42	12	10	35	1.77
173216--173256	18	2.3	18	95	0	73	65	9	7	17	1.44
186024--186150	62	2.0	62	100	0	254	28	36	15	19	1.93
187076--187126	19	2.6	20	90	3	77	43	5	15	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190002--190051	24	2.0	24	84	3	64	22	20	18	40	1.92
191328--191375	11	4.5	11	84	5	62	2	18	2	77	0.97
192085--192135	19	2.6	20	90	3	77	43	5	15	35	1.71
195057--195086	16	1.9	16	93	6	53	0	40	0	60	0.97
196430--196472	21	2.0	21	86	8	61	44	25	4	25	1.73
205257--205284	2	14.0	2	100	0	56	50	0	0	50	1.00
208317--208431	60	1.9	60	81	0	140	40	8	13	38	1.75
209927--209967	19	2.2	19	86	4	57	53	0	9	36	1.34
213327--213366	19	2.0	20	85	4	55	15	37	5	42	1.68
216226--216258	2	16.5	2	100	0	66	48	0	0	51	1.00
216564--216608	21	2.1	21	88	8	65	57	4	4	33	1.38
221897--221940	23	1.9	23	95	0	79	15	29	27	27	1.96
222238--222297	29	2.0	31	90	6	97	35	6	16	41	1.75
222477--222518	21	2.0	21	95	0	75	23	21	28	26	1.99
222547--222586	20	1.9	21	85	10	55	37	37	10	15	1.80
222802--222871	34	2.1	32	86	5	95	32	15	30	21	1.94
224757--224955	99	2.0	99	97	0	371	36	16	20	26	1.94
226451--226514	30	2.1	30	97	0	119	37	3	15	43	1.63
238287--238320	16	2.1	17	94	5	61	32	0	5	61	1.20
241164--241193	2	15.0	2	100	0	60	50	0	0	50	1.00
243680--243723	22	2.2	19	84	12	52	31	0	4	63	1.14
245236--245529	111	2.6	110	82	2	354	34	11	31	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267100--267139	2	20.0	2	100	0	80	50	0	0	50	1.00
269033--269201	5	34.8	5	85	12	237	39	0	0	60	1.01
269000--269204	56	3.4	61	79	17	207	38	1	0	58	1.16
286418--286477	17	3.2	17	75	15	57	56	1	3	38	1.26
295453--295503	23	2.2	22	83	13	59	25	11	17	45	1.83
295465--295514	24	2.1	23	85	7	64	30	6	20	44	1.75
300471--300601	60	2.2	59	81	9	142	34	14	16	35	1.89
300316--300942	312	2.0	312	98	0	1218	35	17	16	30	1.92
300768--300913	59	2.5	59	78	7	145	34	13	17	34	1.89
304005--304036	13	2.5	13	100	0	64	46	0	9	43	1.35
305047--305160	60	1.9	60	83	7	151	35	13	14	37	1.84
306224--306284	22	2.8	22	89	0	86	24	24	19	31	1.98
311826--311869	17	2.5	18	85	10	56	47	2	6	43	1.42
317119--317167	24	2.0	24	84	7	64	44	2	14	38	1.56
317044--317724	213	3.2	211	86	5	863	36	10	9	42	1.72
321902--322133	73	3.1	72	87	5	286	31	12	4	51	1.59
321934--322164	78	3.0	78	89	5	323	32	13	5	48	1.64
322278--322401	63	2.0	63	84	6	164	50	8	5	36	1.56
323260--323317	30	1.9	30	85	0	80	13	22	34	29	1.93
323934--324008	31	2.4	31	90	0	123	34	9	2	53	1.47
324040--324122	40	2.2	36	89	8	121	32	8	4	54	1.52
349073--349114	22	2.0	22	85	4	59	28	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350289--350337	21	2.3	21	82	0	53	28	20	20	30	1.98
353164--353205	18	2.3	18	87	0	57	47	0	4	47	1.23
353609--353720	56	2.0	56	84	6	147	33	12	16	36	1.87
355066--355100	4	8.8	4	93	0	61	28	0	22	48	1.51
356326--356369	17	2.4	19	77	14	56	45	0	0	54	0.99
356330--356407	40	2.0	40	85	10	106	41	1	0	57	1.07
356978--357291	42	7.3	41	72	10	166	51	6	16	24	1.68
356978--357246	42	6.3	42	74	8	195	51	7	16	24	1.69
357253--357335	43	1.9	43	85	9	116	55	6	12	26	1.59
360299--360351	2	27.0	2	96	3	99	49	0	0	50	1.00
370517--370667	61	2.5	60	80	6	171	33	15	15	35	1.89
377732--377809	35	2.2	35	93	0	129	41	10	12	35	1.77
386448--386482	12	2.9	12	91	0	61	54	0	0	45	0.99
387307--387351	17	2.6	18	82	3	56	35	0	20	44	1.51
387426--387574	62	2.4	63	86	3	203	36	13	13	36	1.84
388947--388989	20	2.2	20	91	0	68	44	13	11	30	1.80
400864--400910	21	2.2	22	84	3	60	59	0	6	34	1.23
413763--413799	20	1.9	19	89	10	58	45	10	24	18	1.81
413935--414020	37	2.6	31	73	21	84	47	4	0	47	1.22
415249--415427	62	3.0	62	84	3	195	32	20	4	42	1.72
415292--415427	60	2.2	61	86	2	184	30	22	5	41	1.76
415548--415721	60	2.9	62	81	10	211	37	3	25	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419479--419942	112	4.1	112	92	0	757	45	13	15	26	1.83
419479--419942	225	2.1	224	91	0	757	45	13	15	26	1.83
419813--420265	179	2.5	180	89	2	660	44	11	15	28	1.82
430420--430463	22	2.0	22	100	0	88	45	13	4	36	1.64
436240--436296	21	2.6	21	72	17	53	57	21	3	17	1.54
437105--437182	38	2.1	38	85	4	104	23	11	32	33	1.90
437871--438003	60	2.2	60	83	2	160	34	12	17	36	1.87
440834--440974	72	1.9	73	82	4	178	25	18	14	41	1.88
441286--441381	2	48.0	2	100	0	192	50	0	0	50	1.00
445612--445721	24	4.6	24	77	7	116	20	19	18	42	1.89

Tables:   1   2   3   4   5   6   7   8