genome.fa.s8909.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008909.1 Hibiscus syriacus cultivar Beakdansim tig00112206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2327114

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448027--448060	16	2.1	17	89	10	54	41	0	0	58	0.98
448944--449014	31	2.2	32	87	5	108	28	23	14	33	1.94
452567--452594	2	14.0	2	100	0	56	50	0	0	50	1.00
454077--454111	15	2.5	14	90	9	54	51	0	0	48	1.00
459924--459990	29	2.3	29	84	2	80	40	5	10	43	1.63
469733--469775	19	2.3	18	76	4	50	51	2	2	44	1.27
469723--469814	42	2.2	42	83	9	109	53	2	1	43	1.20
469800--469843	14	3.1	14	87	6	61	45	0	0	54	0.99
470130--470163	9	3.7	9	84	7	50	64	0	0	35	0.94
470128--470169	19	2.3	18	76	11	50	59	0	0	40	0.97
470593--470622	16	1.9	15	93	6	51	50	0	0	50	1.00
472274--472946	337	2.0	335	98	1	1296	27	13	23	34	1.93
475083--475250	84	2.0	84	96	0	309	22	25	16	35	1.95
480573--480630	28	2.1	28	83	6	73	60	8	1	29	1.36
480626--480706	25	3.5	25	68	20	77	69	4	3	22	1.24
480630--480748	42	2.8	43	96	2	213	68	5	4	21	1.26
481122--481189	21	3.2	21	75	8	66	19	11	35	33	1.88
483092--483252	60	2.7	59	76	4	171	21	32	26	19	1.97
485345--485444	42	2.4	42	81	6	114	46	1	2	51	1.19
485383--485444	21	3.0	21	77	11	67	48	0	1	50	1.10
485475--485508	2	17.0	2	100	0	68	50	0	0	50	1.00
488726--488759	17	2.0	17	88	0	50	64	2	0	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489211--489294	42	2.0	42	100	0	168	30	11	26	30	1.92
490282--490882	176	3.4	175	80	9	707	35	12	16	34	1.87
495504--495561	28	2.1	28	87	6	82	39	3	13	43	1.61
496823--496938	60	1.9	60	83	0	151	37	12	14	35	1.85
497326--497369	23	2.0	22	86	4	61	61	2	0	36	1.09
498704--498759	24	2.3	24	96	0	103	55	5	8	30	1.53
499571--499908	168	2.0	168	90	0	523	27	11	20	40	1.87
505581--505620	21	1.9	21	84	0	53	42	25	2	30	1.68
506826--506879	20	2.8	20	83	8	58	62	3	1	31	1.23
514965--515055	31	2.9	31	86	0	119	45	12	13	29	1.79
519278--519579	49	6.3	49	77	13	335	39	22	8	29	1.83
519396--519464	34	2.0	34	94	0	120	39	26	2	31	1.71
519278--519579	90	3.2	96	79	14	363	39	22	8	29	1.83
520248--520277	2	15.0	2	100	0	60	50	0	0	50	1.00
520604--520641	14	2.7	15	88	12	62	47	0	0	52	1.00
522789--522838	21	2.4	21	83	6	57	34	26	12	28	1.92
526341--526396	27	2.1	27	96	0	103	37	12	3	46	1.59
529707--529735	2	14.5	2	100	0	58	51	0	0	48	1.00
540607--540645	18	2.2	18	86	13	55	64	2	0	33	1.08
545885--545976	38	2.4	38	84	12	111	38	10	0	51	1.37
548014--548075	24	2.6	24	100	0	124	17	6	33	41	1.75
552195--552256	22	2.8	22	90	0	97	32	25	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560242--560287	24	1.9	24	82	8	58	52	19	13	15	1.75
561272--561316	6	6.8	6	85	14	54	60	0	2	37	1.09
561378--561456	30	2.4	33	78	12	83	49	2	12	35	1.54
563121--563150	3	10.0	3	92	0	51	3	66	30	0	1.07
573865--573922	29	2.0	29	86	6	82	13	34	25	25	1.93
573965--573997	14	2.4	14	94	0	57	24	39	30	6	1.79
573979--574063	33	2.6	33	88	0	125	24	28	37	9	1.86
574070--574125	23	2.4	23	87	0	85	10	37	23	28	1.88
574070--574132	23	2.7	23	85	0	72	9	38	25	26	1.87
574115--574145	14	2.2	14	94	0	53	6	32	35	25	1.82
580005--580046	17	2.4	19	80	15	54	69	2	4	23	1.20
580024--580420	200	2.0	194	90	5	629	58	4	7	29	1.44
581393--581421	3	9.7	3	100	0	58	68	0	0	31	0.89
581880--582755	105	8.4	105	94	2	1487	23	18	25	32	1.97
581880--582755	209	4.2	209	94	1	1467	23	18	25	32	1.97
583541--583565	1	25.0	1	100	0	50	0	0	0	100	0.00
594218--594259	17	2.4	19	80	15	54	69	2	4	23	1.20
594237--594614	188	2.0	182	88	9	557	57	4	7	29	1.46
595586--595617	3	10.7	3	100	0	64	68	0	0	31	0.90
597823--597849	3	9.0	3	100	0	54	33	0	0	66	0.92
608032--608100	30	2.2	32	78	16	74	56	1	1	40	1.17
608378--608489	35	3.2	34	83	7	136	41	21	0	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609444--609555	35	3.2	34	86	7	154	33	0	23	41	1.60
615955--615979	2	12.5	2	100	0	50	52	0	0	48	1.00
616447--616497	27	2.0	25	84	7	66	33	35	7	23	1.84
617070--617100	15	2.1	15	100	0	62	25	12	19	41	1.87
623727--623755	2	14.5	2	100	0	58	51	0	0	48	1.00
625267--625347	32	2.5	32	91	0	135	41	13	27	17	1.87
630545--630585	2	20.5	2	100	0	82	51	0	0	48	1.00
630652--630683	16	2.0	16	100	0	64	12	6	18	62	1.50
635577--635979	212	1.9	212	87	2	594	26	15	20	37	1.92
645550--645612	27	2.3	27	94	0	108	30	17	31	20	1.96
648542--649243	114	6.0	114	89	7	1064	39	21	11	27	1.88
648542--649200	242	2.8	239	96	2	1227	38	21	12	27	1.89
649464--649529	30	2.1	30	83	8	78	24	13	57	4	1.55
649961--649985	12	2.1	12	100	0	50	24	0	48	28	1.52
650254--650361	52	2.0	52	85	3	144	32	18	10	38	1.84
653192--653234	21	2.0	22	90	4	70	25	30	23	20	1.99
653945--654038	31	3.0	31	89	3	127	39	23	17	20	1.92
657260--657341	35	2.3	35	83	4	103	46	24	4	24	1.72
658188--658259	23	3.0	24	84	8	76	56	2	2	37	1.28
660880--660932	2	26.5	2	100	0	106	49	0	0	50	1.00
661861--661915	26	2.1	26	83	6	67	21	16	20	41	1.90
671707--671800	49	1.9	49	88	0	143	17	36	29	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673647--673785	60	2.3	60	82	4	165	33	15	16	33	1.91
674645--674702	28	2.0	29	83	3	73	39	17	10	32	1.83
677000--677054	25	2.2	25	90	0	83	21	10	27	40	1.87
679360--679390	14	2.2	14	94	0	53	41	9	19	29	1.83
680417--680490	37	2.0	37	100	0	148	43	21	13	21	1.87
681932--681998	31	2.2	30	84	7	82	20	25	13	40	1.89
687023--687055	13	2.5	13	95	0	57	15	48	21	15	1.81
686998--687071	17	4.4	18	70	19	70	18	47	20	13	1.82
687050--687079	13	2.3	13	94	0	51	16	43	23	16	1.87
689480--689561	24	3.5	24	84	3	112	26	18	19	35	1.95
691766--691798	13	2.5	13	95	0	57	15	48	21	15	1.81
691741--691814	17	4.4	18	70	19	70	18	47	20	13	1.82
691793--691822	13	2.3	13	94	0	51	16	43	23	16	1.87
694223--694304	24	3.5	24	84	3	112	26	18	19	35	1.95
709698--709762	23	2.8	23	84	9	87	23	29	36	10	1.88
709773--709828	29	1.9	29	88	0	85	21	28	35	14	1.92
710636--710671	19	1.9	19	88	5	56	22	11	13	52	1.72
711822--711881	27	2.2	28	82	8	79	61	5	8	25	1.44
712127--712160	15	2.2	16	89	5	52	52	2	0	44	1.16
712126--712163	16	2.4	17	82	13	53	55	2	0	42	1.14
712343--712437	30	3.4	29	79	10	94	43	9	6	41	1.62
715535--715573	20	1.9	21	89	5	62	46	7	7	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716188--716245	10	5.7	10	81	4	71	74	1	1	22	1.01
716293--716349	24	2.3	26	87	6	82	56	0	1	42	1.10
716732--716800	29	2.3	29	82	12	77	24	2	4	68	1.22
716748--716789	19	2.3	19	83	4	50	23	0	2	73	0.94
716751--716801	13	3.3	16	81	18	56	23	1	3	70	1.14
716741--716807	30	2.2	30	86	7	91	26	2	2	67	1.20
730522--730673	78	1.9	78	86	2	216	19	23	19	37	1.94
730684--730849	84	2.0	84	100	0	332	22	28	18	30	1.97
734177--734251	38	2.0	38	100	0	150	34	16	24	25	1.95
734968--735439	261	1.8	261	90	0	773	23	17	30	28	1.97

Tables:   1   2   3   4   5   6   7   8