genome.fa.s8909.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008909.1 Hibiscus syriacus cultivar Beakdansim tig00112206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2327114

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1246448--1246482	16	2.1	18	89	10	56	25	8	0	65	1.21
1247286--1247500	20	10.6	20	75	5	207	16	21	24	38	1.93
1247261--1247500	61	3.9	61	78	4	277	17	20	24	37	1.94
1247306--1247592	82	3.5	82	86	6	352	19	19	24	37	1.94
1247306--1247500	41	4.8	41	96	1	347	16	21	24	37	1.94
1247309--1247586	41	6.8	41	92	2	232	18	19	24	37	1.94
1247306--1247592	123	2.3	122	81	9	334	19	19	24	37	1.94
1247514--1247579	19	3.3	19	68	12	60	19	19	21	39	1.93
1247663--1247701	6	6.5	6	100	0	78	33	51	15	0	1.44
1248195--1248232	6	6.7	6	96	3	62	0	18	52	28	1.45
1248341--1248457	41	2.9	41	93	0	207	39	24	17	17	1.92
1248344--1248477	20	6.6	20	70	5	108	41	23	19	15	1.90
1248385--1248502	61	1.9	61	92	0	200	39	22	19	17	1.92
1251917--1251977	23	2.7	23	92	0	104	29	27	26	16	1.97
1253998--1254083	23	3.7	23	72	14	86	19	25	25	29	1.99
1255799--1255836	20	1.9	20	88	0	58	26	18	18	36	1.94
1255844--1256004	64	2.5	63	79	8	166	27	22	17	32	1.96
1258537--1258592	2	28.0	2	100	0	112	50	0	0	50	1.00
1261207--1262494	182	7.2	182	77	10	985	27	15	12	44	1.82
1261652--1262524	181	4.8	184	88	3	1185	27	15	13	43	1.84
1261172--1262520	529	2.5	528	86	5	1758	27	15	12	44	1.82
1262449--1262487	20	1.9	21	94	5	71	12	15	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272606--1272670	30	2.1	31	88	2	96	26	12	15	46	1.81
1279765--1279844	3	26.7	3	100	0	160	0	33	0	66	0.92
1282276--1282333	28	2.1	28	80	6	64	37	12	10	39	1.77
1285188--1285491	102	3.0	102	84	0	331	25	20	26	27	1.99
1291028--1291061	15	2.3	15	94	0	59	5	17	67	8	1.37
1298569--1298706	69	2.0	69	89	0	213	23	12	23	40	1.88
1302214--1302260	24	1.9	25	82	4	60	31	19	10	38	1.86
1310698--1310789	23	4.0	23	82	0	112	30	25	23	20	1.99
1310805--1311017	103	2.1	103	95	0	381	36	23	14	26	1.93
1312367--1312426	20	2.9	21	80	7	77	18	25	23	33	1.97
1314121--1314154	2	17.0	2	100	0	68	50	0	0	50	1.00
1317426--1317477	21	2.5	21	81	3	61	38	19	25	17	1.93
1317466--1317579	20	5.7	20	82	2	111	33	23	18	24	1.97
1317463--1317579	61	1.9	61	85	0	162	35	23	17	23	1.96
1318104--1318168	19	3.4	19	84	2	76	44	26	18	10	1.82
1318164--1318366	19	11.1	19	80	12	210	12	22	21	43	1.86
1318164--1318366	39	5.6	38	82	9	210	12	22	21	43	1.86
1318255--1318341	33	2.6	33	92	0	138	11	25	25	37	1.89
1320360--1320482	42	2.9	42	78	2	113	21	36	18	22	1.95
1321837--1321872	14	2.6	14	95	0	63	30	0	25	44	1.54
1322051--1322172	19	6.7	19	87	9	182	14	22	17	45	1.84
1322068--1322192	52	2.3	54	83	8	146	16	21	17	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1325752--1325802	20	2.5	20	96	0	93	33	21	23	21	1.97
1325833--1325886	14	3.5	14	77	22	63	11	20	20	48	1.80
1325828--1325905	33	2.4	33	91	0	120	12	23	21	42	1.87
1325993--1326029	14	2.6	14	86	0	56	48	21	0	29	1.50
1326576--1326612	14	2.6	14	86	0	56	48	21	0	29	1.50
1328475--1328529	20	2.8	19	91	5	92	32	23	27	16	1.96
1328456--1328573	20	6.4	19	76	13	86	40	24	21	13	1.89
1328530--1328587	14	3.9	14	79	16	71	48	25	17	8	1.75
1328514--1328592	32	2.4	33	95	2	142	46	24	18	10	1.80
1328599--1328694	19	5.6	17	72	21	78	11	19	22	45	1.82
1328621--1328678	14	3.9	14	79	16	71	8	17	25	48	1.75
1328604--1328694	32	2.8	33	94	3	166	10	18	23	47	1.80
1328679--1328732	20	2.8	19	83	5	63	14	24	24	37	1.93
1329204--1329248	18	2.5	18	85	0	63	15	15	42	26	1.87
1330561--1330598	20	1.9	20	88	0	58	50	21	15	13	1.78
1330862--1330903	22	1.9	22	95	0	75	19	16	42	21	1.89
1331093--1331145	20	2.7	20	93	0	88	24	18	28	28	1.98
1331156--1331248	20	4.6	20	78	4	96	18	24	18	38	1.92
1331138--1331251	41	2.8	41	93	4	185	18	21	17	42	1.90
1331582--1331609	2	14.0	2	100	0	56	50	0	0	50	1.00
1332593--1332670	2	39.0	2	100	0	156	50	0	0	50	1.00
1342867--1342944	29	2.7	29	97	0	147	15	34	26	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1343005--1343043	14	2.8	14	100	0	78	7	33	35	23	1.83
1344474--1344510	15	2.5	15	95	0	65	8	70	16	5	1.30
1368397--1368435	2	19.5	2	83	0	51	41	0	7	51	1.31
1368397--1368438	8	5.2	8	97	0	75	40	0	9	50	1.35
1380402--1380562	64	2.5	65	86	7	204	33	18	21	26	1.96
1381862--1381941	22	3.7	22	96	1	144	22	28	25	23	1.99
1385182--1385342	64	2.5	63	87	7	209	34	17	21	26	1.96
1386635--1386698	22	3.0	21	88	4	101	23	28	23	25	2.00
1400231--1400285	27	2.0	27	92	0	92	30	18	18	32	1.95
1401755--1401820	11	5.4	11	72	21	51	27	7	3	62	1.37
1405915--1406005	41	2.2	42	80	7	105	54	2	1	41	1.19
1406067--1406127	27	2.3	27	82	5	70	55	1	1	40	1.19
1408946--1409146	100	2.0	100	93	0	339	19	14	12	53	1.73
1409720--1409778	28	2.1	28	96	0	109	33	23	18	23	1.97
1409811--1409965	31	5.0	31	88	0	220	38	12	22	26	1.89
1410057--1410197	71	2.0	73	94	2	250	38	15	27	18	1.91
1412606--1412662	16	3.6	16	92	0	96	10	12	19	57	1.63
1418179--1418591	215	1.9	215	87	0	610	23	21	16	38	1.93
1418743--1418796	4	13.5	4	92	0	72	44	25	5	24	1.75
1419665--1420006	174	2.0	165	86	5	468	25	23	11	39	1.88
1422172--1422305	59	2.3	59	89	0	196	27	24	19	28	1.99
1422919--1422949	15	2.1	15	93	0	53	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424911--1424950	3	13.7	3	84	5	55	60	2	0	37	1.11
1425208--1425379	91	1.9	91	92	0	290	22	20	16	40	1.91
1425299--1425645	136	2.6	136	93	0	588	24	22	18	34	1.96
1426524--1426604	8	11.2	8	74	20	65	7	13	1	77	1.03
1426514--1426582	36	1.9	36	87	0	102	5	15	0	78	0.94
1426543--1426602	21	2.9	21	80	11	70	6	13	1	78	1.02
1426511--1426605	49	1.9	50	87	6	140	7	15	1	75	1.07
1426511--1426602	13	7.1	13	80	13	100	7	16	1	75	1.09
1426524--1426612	28	3.1	27	75	12	81	7	14	1	76	1.06
1428130--1428163	17	2.0	17	100	0	68	29	23	23	23	1.99
1438130--1438165	2	18.0	2	100	0	72	50	0	0	50	1.00
1439681--1439712	3	10.7	3	93	0	55	62	3	0	34	1.11
1444370--1444425	23	2.4	23	96	0	103	30	17	41	10	1.84
1451729--1451780	20	2.6	20	72	6	52	28	28	17	25	1.97
1451897--1452000	20	5.2	20	92	1	174	25	28	18	26	1.98
1452429--1452519	19	4.4	20	73	17	87	29	27	6	36	1.82
1460778--1460873	21	4.6	21	78	2	95	27	14	29	29	1.95
1460777--1460876	42	2.4	42	83	3	121	26	16	29	29	1.96
1462079--1462141	27	2.4	27	86	5	85	0	25	31	42	1.55
1464675--1464721	18	2.6	17	83	9	58	40	0	8	51	1.33
1480161--1480674	216	2.4	216	78	6	488	35	15	20	28	1.93
1481998--1482046	12	4.1	12	81	0	53	6	26	0	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1482003--1482032	3	10.0	3	92	0	51	0	30	0	70	0.88
1486359--1486383	13	1.9	13	100	0	50	56	4	0	40	1.18
1486339--1486447	37	2.9	37	70	15	89	64	3	0	31	1.17
1488134--1488173	14	2.9	14	96	0	71	35	25	0	40	1.56
1490347--1490401	23	2.4	24	78	6	60	29	10	9	50	1.68
1490359--1490407	24	2.1	24	85	7	66	26	8	10	55	1.61
1490472--1490609	69	2.0	69	87	2	197	43	8	7	40	1.63
1494813--1494850	3	12.7	3	100	0	76	34	0	0	65	0.93
1501706--1501746	19	2.1	20	86	4	57	19	4	2	73	1.13
1502889--1502950	31	2.0	31	83	0	79	29	11	12	46	1.77

Tables:   1   2   3   4   5   6   7   8