genome.fa.s8930.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008930.1 Hibiscus syriacus cultivar Beakdansim tig00112236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  792381

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366993--367027	12	2.9	12	95	0	61	28	51	11	8	1.67
368004--368047	24	1.9	22	86	9	61	56	0	2	40	1.11
368004--368047	23	1.9	23	86	9	63	56	0	2	40	1.11
368356--368389	17	2.0	17	88	0	50	58	8	0	32	1.29
370390--370431	20	2.1	20	100	0	84	42	4	23	28	1.74
372037--372266	69	3.3	68	81	5	239	22	23	20	32	1.98
374102--374258	63	2.5	62	83	5	181	33	22	22	21	1.98
378132--378288	63	2.5	62	83	5	181	32	21	23	22	1.98
380964--381003	20	2.0	20	90	0	62	30	20	10	40	1.85
381260--381297	20	1.9	20	88	0	58	42	15	15	26	1.87
386454--386528	35	2.1	35	92	0	123	44	22	0	33	1.53
388491--388667	75	2.4	75	81	7	225	49	14	6	29	1.68
388957--389008	20	2.5	21	81	3	61	40	19	23	17	1.91
389627--389668	19	2.2	19	86	0	57	50	28	16	4	1.66
389664--389794	19	7.1	19	84	10	182	11	22	19	46	1.81
389664--389769	33	3.1	33	83	12	149	10	23	20	45	1.82
391246--391376	63	2.1	63	98	0	253	21	18	36	23	1.95
392001--392067	21	3.2	21	66	6	55	23	35	20	19	1.95
391949--392067	42	2.8	42	81	5	107	22	36	18	22	1.95
393425--393460	14	2.6	14	95	0	63	30	0	25	44	1.54
393585--393641	14	3.7	14	72	20	51	45	22	24	7	1.77
393567--393656	33	2.7	33	92	0	144	44	21	22	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393567--393627	19	3.5	19	74	21	69	44	21	22	11	1.84
393652--393782	19	7.7	19	67	23	103	15	22	19	42	1.88
393656--393782	33	3.9	32	85	8	184	15	22	18	42	1.89
393649--393781	66	2.0	66	95	0	239	17	22	18	41	1.90
396273--396319	24	2.0	24	91	0	76	34	17	19	29	1.94
396277--396328	24	2.2	24	82	0	59	36	19	17	26	1.94
397371--397428	20	2.9	20	97	0	107	37	24	22	15	1.93
397447--397523	33	2.4	33	86	2	102	12	22	22	42	1.87
397611--397646	13	2.7	13	86	4	54	50	22	0	27	1.50
399509--399575	19	3.5	19	79	4	80	38	23	22	14	1.92
399564--399621	14	3.9	14	79	16	62	48	24	17	10	1.78
399548--399626	32	2.4	33	91	2	124	48	22	17	11	1.79
399633--399696	19	3.6	19	70	20	66	14	20	20	45	1.85
399681--399735	20	2.8	19	83	8	65	16	23	23	36	1.94
400217--400261	18	2.5	18	88	0	72	13	15	44	26	1.83
401580--401638	20	3.0	20	87	0	73	42	22	18	16	1.89
401900--401943	22	2.0	22	100	0	88	18	13	45	22	1.84
402111--402245	20	6.7	20	78	7	112	25	17	24	32	1.97
402234--402326	20	4.5	21	78	4	100	17	24	18	39	1.91
402111--402307	41	4.8	41	79	5	143	22	20	22	35	1.96
402234--402326	41	2.3	41	100	0	186	17	24	18	39	1.91
410614--410651	20	2.0	20	89	5	60	60	0	7	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412092--412120	14	2.0	15	93	6	51	31	0	0	68	0.89
416387--416415	12	2.4	12	100	0	58	48	0	6	44	1.29
416825--416862	18	2.1	18	85	9	51	57	0	5	36	1.21
419450--419557	48	2.2	48	100	0	216	19	17	6	56	1.62
419715--419778	31	2.1	31	93	0	110	31	10	6	51	1.62
428097--428303	104	2.0	103	96	0	378	39	12	6	42	1.68
430111--430151	2	21.0	2	95	5	75	51	0	0	48	1.00
430365--430420	29	1.9	29	96	0	103	12	37	30	19	1.89
430424--430517	33	2.8	33	88	3	127	8	38	26	26	1.85
430436--430527	10	8.6	10	70	13	58	9	36	28	25	1.87
430437--430548	33	3.4	33	86	1	134	11	35	28	24	1.90
430586--430643	29	2.0	29	89	0	89	22	27	36	13	1.92
430745--430800	2	27.5	2	89	3	85	46	3	1	48	1.30
432745--432785	21	2.0	21	95	0	73	51	0	0	48	1.00
440449--440497	2	24.5	2	100	0	98	0	48	0	51	1.00
443677--443721	23	2.0	23	90	0	72	44	0	2	53	1.13
443904--443996	41	2.2	41	80	14	102	49	0	3	47	1.17
445400--445437	20	1.9	20	84	10	51	31	21	15	31	1.94
446864--446933	20	3.5	20	96	0	131	32	8	4	54	1.50
446864--446951	40	2.2	39	88	6	124	31	10	4	53	1.55
450649--450705	16	3.6	16	87	0	69	52	38	5	3	1.41
450680--450793	33	3.5	34	79	5	119	48	25	11	14	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450649--450754	16	6.6	16	69	6	52	50	32	10	7	1.65
451412--451441	14	2.1	14	100	0	60	40	13	0	46	1.43
455083--455141	28	2.1	28	90	0	91	52	13	1	32	1.50
457533--457576	23	1.9	23	90	0	70	31	4	13	50	1.62
458585--459198	106	5.8	105	94	0	1032	21	18	26	33	1.97
458594--459198	211	2.9	211	93	1	1014	22	18	26	33	1.96
459800--459889	47	1.9	46	81	2	108	13	21	15	50	1.78
470137--470187	23	2.2	23	86	6	68	66	0	15	17	1.25
470144--470188	23	2.0	23	91	4	74	64	0	15	20	1.29
470592--470629	13	3.0	13	84	3	51	57	0	0	42	0.98
475724--475751	6	4.7	6	100	0	56	0	17	17	64	1.30
482146--482193	25	1.9	25	91	0	78	50	10	6	33	1.62
482946--482975	15	2.0	15	100	0	60	60	0	0	40	0.97
483205--485188	4	499.5	4	98	1	3735	24	0	25	49	1.50
483769--483841	2	36.5	2	88	0	110	5	0	43	50	1.25
485305--485390	31	2.8	31	75	3	84	37	9	11	41	1.74
496209--496248	21	2.0	21	90	5	64	52	0	0	47	1.00
496383--496476	31	3.1	31	89	3	145	23	24	15	36	1.94
496385--496476	30	3.0	30	90	1	139	23	23	16	35	1.94
499039--499104	25	2.8	22	75	20	53	59	10	7	22	1.56
500616--501277	84	7.9	84	84	2	819	24	17	23	34	1.96
501665--501774	43	2.6	43	86	1	150	20	19	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501995--502083	43	2.1	43	86	0	124	20	16	29	33	1.95
501401--502295	334	2.7	336	88	2	1307	25	17	23	33	1.96
502311--502439	64	2.0	64	92	0	213	31	10	20	37	1.87
502698--502791	32	2.9	32	83	0	98	34	24	9	31	1.88
503770--503833	21	3.1	21	75	18	71	1	18	7	71	1.18
503779--503817	15	2.5	15	87	4	51	2	15	5	76	1.06
504005--504046	2	21.0	2	95	0	75	50	2	0	47	1.14
506724--506748	6	4.2	6	100	0	50	52	0	0	48	1.00
506884--506921	12	3.3	12	85	7	53	68	5	2	23	1.23
508441--508504	31	2.1	31	84	0	83	32	12	28	26	1.93
509580--509640	29	2.1	30	90	3	97	57	0	0	42	0.98
509583--509668	21	3.8	21	69	24	59	59	0	0	40	0.97
509585--509677	35	2.6	37	77	12	97	59	1	0	39	1.05
509593--509753	30	5.4	30	64	21	72	57	1	0	40	1.11
511045--511077	15	2.2	15	94	0	57	21	3	24	51	1.62
516657--516705	21	2.4	22	83	10	59	28	26	14	30	1.95
518802--518875	26	2.8	26	97	0	139	50	27	9	13	1.72
523051--523103	25	2.1	25	82	10	63	41	0	1	56	1.10
523232--523348	58	2.0	58	100	0	234	49	11	17	20	1.78
528142--528211	23	3.1	23	93	2	115	34	20	12	32	1.90
528307--528378	20	3.6	20	79	7	74	54	16	9	19	1.70
530948--531027	31	2.5	32	87	4	117	37	8	0	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531007--531278	7	34.9	8	68	18	76	37	6	2	53	1.40
531004--531139	60	2.2	60	80	12	154	36	7	2	54	1.41
531052--531621	22	25.9	22	72	20	140	34	9	2	53	1.47
531186--531280	51	1.9	48	89	6	145	36	6	3	53	1.42
531099--531915	29	29.0	28	66	21	111	35	9	2	52	1.48
531077--531883	7	113.1	7	68	20	215	34	9	2	53	1.48
531290--531614	88	3.8	86	86	8	423	33	10	2	53	1.49
531290--531614	43	7.6	43	83	8	405	33	10	2	53	1.49
531485--531617	58	2.3	57	80	8	144	33	8	3	54	1.45
531466--531619	80	1.9	80	94	2	274	33	8	3	54	1.47

Tables:   1   2   3   4   5